Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   R5H38_RS09340 Genome accession   NZ_CP137602
Coordinates   1820159..1821109 (-) Length   316 a.a.
NCBI ID   WP_318150623.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1815159..1826109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS09300 - 1815162..1816349 (-) 1188 WP_318150617.1 acetate kinase -
  R5H38_RS09305 comYH 1816399..1817352 (-) 954 WP_318150618.1 class I SAM-dependent methyltransferase Machinery gene
  R5H38_RS09310 comGG 1817372..1817872 (-) 501 WP_318150619.1 competence type IV pilus minor pilin ComGG -
  R5H38_RS09315 comYF 1817850..1818308 (-) 459 WP_412080657.1 competence type IV pilus minor pilin ComGF Machinery gene
  R5H38_RS09320 comGE 1818271..1818564 (-) 294 WP_318150621.1 competence type IV pilus minor pilin ComGE -
  R5H38_RS09325 comGD 1818536..1818940 (-) 405 WP_318150622.1 competence type IV pilus minor pilin ComGD -
  R5H38_RS09330 comYC 1818924..1819208 (-) 285 WP_277837557.1 competence type IV pilus major pilin ComGC Machinery gene
  R5H38_RS09335 comYB 1819210..1820247 (-) 1038 WP_318151035.1 competence type IV pilus assembly protein ComGB Machinery gene
  R5H38_RS09340 comYA 1820159..1821109 (-) 951 WP_318150623.1 competence type IV pilus ATPase ComGA Machinery gene
  R5H38_RS09345 - 1821225..1822148 (+) 924 WP_318151036.1 LD-carboxypeptidase -
  R5H38_RS09350 - 1822208..1822549 (-) 342 WP_217374334.1 DUF1033 family protein -
  R5H38_RS09355 - 1822801..1824082 (+) 1282 Protein_1819 ISL3 family transposase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35529.51 Da        Isoelectric Point: 5.4818

>NTDB_id=899262 R5H38_RS09340 WP_318150623.1 1820159..1821109(-) (comYA) [Streptococcus parasuis strain 221006]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRVMDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCEYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALDRIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=899262 R5H38_RS09340 WP_318150623.1 1820159..1821109(-) (comYA) [Streptococcus parasuis strain 221006]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTAACCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGAATACGAT
TATGGTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGATAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTAGAGATGCAGAAACTG
CTCGAGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGAGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comYA Streptococcus gordonii str. Challis substr. CH1

67.742

98.101

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.516

98.101

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.194

98.101

0.63
  comGA Lactococcus lactis subsp. cremoris KW2

55.521

100

0.557
  comGA Latilactobacillus sakei subsp. sakei 23K

42.238

87.658

0.37