Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   R5H38_RS09315 Genome accession   NZ_CP137602
Coordinates   1817850..1818308 (-) Length   152 a.a.
NCBI ID   WP_412080657.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812850..1823308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS09290 - 1813045..1814301 (-) 1257 WP_318151034.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  R5H38_RS09295 - 1814356..1814907 (-) 552 WP_217374325.1 folate family ECF transporter S component -
  R5H38_RS09300 - 1815162..1816349 (-) 1188 WP_318150617.1 acetate kinase -
  R5H38_RS09305 comYH 1816399..1817352 (-) 954 WP_318150618.1 class I SAM-dependent methyltransferase Machinery gene
  R5H38_RS09310 comGG 1817372..1817872 (-) 501 WP_318150619.1 competence type IV pilus minor pilin ComGG -
  R5H38_RS09315 comYF 1817850..1818308 (-) 459 WP_412080657.1 competence type IV pilus minor pilin ComGF Machinery gene
  R5H38_RS09320 comGE 1818271..1818564 (-) 294 WP_318150621.1 competence type IV pilus minor pilin ComGE -
  R5H38_RS09325 comGD 1818536..1818940 (-) 405 WP_318150622.1 competence type IV pilus minor pilin ComGD -
  R5H38_RS09330 comYC 1818924..1819208 (-) 285 WP_277837557.1 competence type IV pilus major pilin ComGC Machinery gene
  R5H38_RS09335 comYB 1819210..1820247 (-) 1038 WP_318151035.1 competence type IV pilus assembly protein ComGB Machinery gene
  R5H38_RS09340 comYA 1820159..1821109 (-) 951 WP_318150623.1 competence type IV pilus ATPase ComGA Machinery gene
  R5H38_RS09345 - 1821225..1822148 (+) 924 WP_318151036.1 LD-carboxypeptidase -
  R5H38_RS09350 - 1822208..1822549 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17349.04 Da        Isoelectric Point: 8.9213

>NTDB_id=899259 R5H38_RS09315 WP_412080657.1 1817850..1818308(-) (comYF) [Streptococcus parasuis strain 221006]
MKVRRLLGLRKTKLAAFTLLECLITLLIISGSLLVIEGLSKLMAHEVGYQERHVEKQWLLFCDQLRAEWEGASLDRVDSG
KLYLTKGEKSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGELIQLNVTFESGEERSFRYVFEKTN

Nucleotide


Download         Length: 459 bp        

>NTDB_id=899259 R5H38_RS09315 WP_412080657.1 1817850..1818308(-) (comYF) [Streptococcus parasuis strain 221006]
ATGAAGGTAAGGAGGTTATTAGGATTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTACCTTACT
CATTATTTCTGGCAGCTTGCTAGTGATTGAAGGATTATCAAAATTGATGGCGCATGAGGTTGGCTATCAAGAACGTCATG
TGGAAAAACAGTGGTTACTATTTTGTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGA
AAGTTGTACCTAACCAAAGGGGAAAAATCATTGGCATTTGGCAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAA
TGGTCAGGGCTATCAGCCCATGTTGTACAAAGTTTATTCAGCTACTTATGCCCAACAAGGCGAGCTTATACAGCTGAATG
TAACATTTGAAAGTGGGGAGGAAAGGAGTTTTAGGTATGTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(50-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA159

52.113

93.421

0.487
  comYF Streptococcus mutans UA140

52.113

93.421

0.487
  comGF Lactococcus lactis subsp. cremoris KW2

47.518

92.763

0.441
  comGF/cglF Streptococcus mitis NCTC 12261

45

92.105

0.414
  comGF/cglF Streptococcus pneumoniae Rx1

44.928

90.789

0.408
  comGF/cglF Streptococcus pneumoniae D39

44.928

90.789

0.408
  comGF/cglF Streptococcus pneumoniae R6

44.928

90.789

0.408
  comGF/cglF Streptococcus pneumoniae TIGR4

44.928

90.789

0.408
  comGF/cglF Streptococcus mitis SK321

43.885

91.447

0.401