Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   R5H38_RS09335 Genome accession   NZ_CP137602
Coordinates   1819210..1820247 (-) Length   345 a.a.
NCBI ID   WP_318151035.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814210..1825247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS09295 - 1814356..1814907 (-) 552 WP_217374325.1 folate family ECF transporter S component -
  R5H38_RS09300 - 1815162..1816349 (-) 1188 WP_318150617.1 acetate kinase -
  R5H38_RS09305 comYH 1816399..1817352 (-) 954 WP_318150618.1 class I SAM-dependent methyltransferase Machinery gene
  R5H38_RS09310 comGG 1817372..1817872 (-) 501 WP_318150619.1 competence type IV pilus minor pilin ComGG -
  R5H38_RS09315 comYF 1817850..1818308 (-) 459 WP_412080657.1 competence type IV pilus minor pilin ComGF Machinery gene
  R5H38_RS09320 comGE 1818271..1818564 (-) 294 WP_318150621.1 competence type IV pilus minor pilin ComGE -
  R5H38_RS09325 comGD 1818536..1818940 (-) 405 WP_318150622.1 competence type IV pilus minor pilin ComGD -
  R5H38_RS09330 comYC 1818924..1819208 (-) 285 WP_277837557.1 competence type IV pilus major pilin ComGC Machinery gene
  R5H38_RS09335 comYB 1819210..1820247 (-) 1038 WP_318151035.1 competence type IV pilus assembly protein ComGB Machinery gene
  R5H38_RS09340 comYA 1820159..1821109 (-) 951 WP_318150623.1 competence type IV pilus ATPase ComGA Machinery gene
  R5H38_RS09345 - 1821225..1822148 (+) 924 WP_318151036.1 LD-carboxypeptidase -
  R5H38_RS09350 - 1822208..1822549 (-) 342 WP_217374334.1 DUF1033 family protein -
  R5H38_RS09355 - 1822801..1824082 (+) 1282 Protein_1819 ISL3 family transposase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39269.22 Da        Isoelectric Point: 9.2929

>NTDB_id=899261 R5H38_RS09335 WP_318151035.1 1819210..1820247(-) (comYB) [Streptococcus parasuis strain 221006]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYHRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHSHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=899261 R5H38_RS09335 WP_318151035.1 1819210..1820247(-) (comYB) [Streptococcus parasuis strain 221006]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCGGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGTAAGGTCCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCACAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCACTTTCTGATGGGCATAGTTTCCATTCTCATAT
ACAAACGTATGGTTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGT
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.588

98.551

0.597
  comYB Streptococcus mutans UA140

59.824

98.841

0.591
  comYB Streptococcus mutans UA159

59.824

98.841

0.591
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

97.681

0.501