Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R4T16_RS23140 Genome accession   NZ_CP137183
Coordinates   4733146..4733670 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain F1917     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4728146..4738670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4T16_RS23120 (R4T16_23095) soxR 4729787..4730245 (-) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -
  R4T16_RS23125 (R4T16_23100) soxS 4730332..4730655 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  R4T16_RS23130 (R4T16_23105) - 4730658..4732244 (-) 1587 WP_003841054.1 EAL domain-containing protein -
  R4T16_RS23135 (R4T16_23110) - 4732798..4733079 (+) 282 WP_003031727.1 YjcB family protein -
  R4T16_RS23140 (R4T16_23115) ssb 4733146..4733670 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R4T16_RS23145 (R4T16_23120) uvrA 4733922..4736744 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  R4T16_RS23150 (R4T16_23125) - 4736860..4737216 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  R4T16_RS23155 (R4T16_23130) aphA 4737344..4738057 (-) 714 WP_044702294.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=896756 R4T16_RS23140 WP_003826621.1 4733146..4733670(-) (ssb) [Citrobacter freundii strain F1917]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=896756 R4T16_RS23140 WP_003826621.1 4733146..4733670(-) (ssb) [Citrobacter freundii strain F1917]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5