Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAG092_RS11410 Genome accession   NZ_CP154874
Coordinates   2347819..2348907 (-) Length   362 a.a.
NCBI ID   WP_373386775.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2342819..2353907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS11385 (AAG092_11320) - 2343514..2344380 (-) 867 WP_373386769.1 EamA family transporter -
  AAG092_RS11390 (AAG092_11325) aroE 2344382..2345203 (-) 822 WP_373386771.1 shikimate dehydrogenase -
  AAG092_RS11395 (AAG092_11330) hemF 2345200..2346159 (-) 960 WP_373386772.1 oxygen-dependent coproporphyrinogen oxidase -
  AAG092_RS11400 (AAG092_11335) - 2346238..2347215 (+) 978 WP_373386773.1 quinone oxidoreductase -
  AAG092_RS11405 (AAG092_11340) - 2347222..2347779 (-) 558 WP_373386774.1 L-threonylcarbamoyladenylate synthase -
  AAG092_RS11410 (AAG092_11345) dprA 2347819..2348907 (-) 1089 WP_373386775.1 DNA-processing protein DprA Machinery gene
  AAG092_RS11415 (AAG092_11350) tsaP 2348971..2350011 (-) 1041 WP_110680573.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AAG092_RS11420 (AAG092_11355) def 2350145..2350651 (+) 507 WP_373386776.1 peptide deformylase -
  AAG092_RS11425 (AAG092_11360) fmt 2350713..2351645 (+) 933 WP_373386777.1 methionyl-tRNA formyltransferase -
  AAG092_RS11430 (AAG092_11365) rsmB 2351642..2352955 (+) 1314 WP_373386778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38004.42 Da        Isoelectric Point: 6.4118

>NTDB_id=893884 AAG092_RS11410 WP_373386775.1 2347819..2348907(-) (dprA) [Pseudomonas alcaligenes strain Med1]
MHNLSPAELEARLRLHGLPELGPRRFRRLLEAFGSASAALSAPATAWRALGLPGSCAEPRRSADIREQATAALRWLEQPG
QTLLMWDDPAYPALLAELSDAPPLLFVAGDAALLERPQLAMVGSRRASRSGLDTAQAFARSLAGGGFVITSGLALGIDGA
AHQGALEAGGATVAVLGTGLQRLYPQRHVGLAGRIAEQGGALVSELPLDCPPQASNFPRRNRIISGLALGVLVVEASPSS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIREGATLVESVEDILQALRGWQRVTPPAAAEADEAHPLLLELRAAP
QTSEGLAQACDLPIGEVLATLTELELQGLVACEAGRWVHRPR

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=893884 AAG092_RS11410 WP_373386775.1 2347819..2348907(-) (dprA) [Pseudomonas alcaligenes strain Med1]
ATGCACAACCTTTCCCCCGCCGAACTGGAGGCGCGCCTGCGCCTGCACGGCCTGCCGGAGCTCGGCCCGCGGCGCTTCCG
CCGCCTGCTGGAAGCCTTTGGCAGCGCCTCCGCCGCCCTCAGCGCGCCCGCCACCGCCTGGCGCGCGCTGGGCCTGCCCG
GCAGCTGTGCCGAGCCCAGGCGCAGCGCAGACATCCGCGAGCAGGCCACGGCCGCCCTGCGCTGGCTGGAGCAGCCGGGC
CAGACCCTGCTGATGTGGGACGATCCCGCCTACCCCGCCCTGCTGGCCGAGCTGAGCGATGCCCCGCCGCTGCTGTTCGT
CGCCGGTGATGCGGCGTTGCTGGAGCGTCCGCAGCTGGCCATGGTCGGCAGTCGGCGCGCCTCGCGGTCGGGGCTGGATA
CCGCCCAGGCCTTTGCCCGCAGCCTGGCCGGTGGCGGCTTCGTGATCACCAGCGGCCTGGCCCTGGGTATCGACGGTGCC
GCCCACCAGGGCGCGCTGGAAGCTGGCGGTGCAACGGTCGCGGTGCTCGGTACCGGCCTGCAGCGGCTCTACCCGCAGCG
CCACGTCGGACTGGCCGGGCGCATTGCCGAGCAGGGTGGCGCGCTGGTTTCCGAACTGCCGCTGGACTGCCCGCCGCAGG
CCAGCAACTTTCCCCGGCGTAACCGCATCATCAGCGGCCTGGCGCTCGGCGTGCTGGTGGTTGAGGCCAGCCCCTCCAGC
GGCTCGCTGATCACCGCGCGCCTGGCCGCCGAGCAGGGCCGCGAGGTCTATGCGATTCCCGGCTCCATCCACCATCCTGG
CGCCCGCGGCTGCCACCAGCTGATCCGCGAGGGCGCGACCCTGGTCGAGAGCGTCGAGGACATTCTCCAGGCCCTGCGCG
GCTGGCAGCGTGTGACACCGCCTGCCGCAGCCGAGGCGGATGAAGCACATCCGCTGCTGCTGGAGTTGCGTGCGGCGCCG
CAGACCAGCGAGGGTCTGGCCCAGGCCTGCGACCTGCCCATCGGCGAAGTGCTGGCCACGCTCACCGAGCTGGAGCTGCA
GGGCCTGGTGGCCTGCGAGGCCGGGCGCTGGGTGCATCGTCCGCGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(299-355)

DNA recombination-mediator protein A (DNA_processg_A)

(76-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

44.658

100

0.45
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.971

100

0.448
  dprA Vibrio cholerae strain A1552

42.971

100

0.448
  dprA Legionella pneumophila strain ERS1305867

41.989

100

0.42
  dprA Acinetobacter baylyi ADP1

41.972

98.066

0.412
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.761

97.238

0.406
  dprA Glaesserella parasuis strain SC1401

49.141

80.387

0.395
  dprA Neisseria meningitidis MC58

45.833

86.188

0.395
  dprA Neisseria meningitidis strain C311

45.833

86.188

0.395
  dprA Neisseria gonorrhoeae strain FA1090

44.237

88.674

0.392
  dprA Neisseria gonorrhoeae MS11

43.925

88.674

0.39
  dprA Acinetobacter baumannii D1279779

40.23

96.133

0.387
  dprA Acinetobacter baumannii strain A118

39.429

96.685

0.381