Detailed information NTG0893885

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: AAG092_RS11415
• Genome accession: NZ_CP154874
• Coordinates: 2348971..2350011 (-)
• Length: 346 a.a.
• NCBI ID: WP_110680573.1
• Uniprot ID: -
• Organism: Pseudomonas alcaligenes strain Med1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2343971..2355011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG092_RS11390 (AAG092_11325)	aroE	2344382..2345203 (-)	822	WP_373386771.1	shikimate dehydrogenase	-
AAG092_RS11395 (AAG092_11330)	hemF	2345200..2346159 (-)	960	WP_373386772.1	oxygen-dependent coproporphyrinogen oxidase	-
AAG092_RS11400 (AAG092_11335)	-	2346238..2347215 (+)	978	WP_373386773.1	quinone oxidoreductase	-
AAG092_RS11405 (AAG092_11340)	-	2347222..2347779 (-)	558	WP_373386774.1	L-threonylcarbamoyladenylate synthase	-
AAG092_RS11410 (AAG092_11345)	dprA	2347819..2348907 (-)	1089	WP_373386775.1	DNA-processing protein DprA	Machinery gene
AAG092_RS11415 (AAG092_11350)	tsaP	2348971..2350011 (-)	1041	WP_110680573.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
AAG092_RS11420 (AAG092_11355)	def	2350145..2350651 (+)	507	WP_373386776.1	peptide deformylase	-
AAG092_RS11425 (AAG092_11360)	fmt	2350713..2351645 (+)	933	WP_373386777.1	methionyl-tRNA formyltransferase	-
AAG092_RS11430 (AAG092_11365)	rsmB	2351642..2352955 (+)	1314	WP_373386778.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
AAG092_RS11435 (AAG092_11370)	trkA	2352969..2354342 (+)	1374	WP_110680577.1	Trk system potassium transporter TrkA	-
AAG092_RS11440 (AAG092_11375)	-	2354365..2354706 (+)	342	WP_110680578.1	tetratricopeptide repeat protein	-
AAG092_RS11445 (AAG092_11380)	-	2354710..2354976 (-)	267	WP_373386779.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 37976.11 Da
• Isoelectric Point: 4.8315

>NTDB_id=893885 AAG092_RS11415 WP_110680573.1 2348971..2350011(-) (tsaP) [Pseudomonas alcaligenes strain Med1]
MRKSLLALLLVAAGGLAQTGLVQAAVQLKEGHPDRYTVVKGDTLWDISGKFLSQPWKWPELWHANPQIENPHLIYPGDTL
SLVYIDGQPRLMLNRGESRGTIKLSPQVRSTPMAQAIPTIPLEAINSFLLSNRIVDTAEDFNARPYVVAGNAERVVSGAG
DRIYARGSFEDGQAVYGIFRQGKIYTDPETDEFLGINADDIGTGEVVAEEGDIATLSLSRSTQEVRLGDRLFPTEERAVN
STFMPSEPATEVDGVILDVPRGVNRVGQFDVVTINKGKIDGLNEGNVLAVYKTGETVRDRVTGESVKIPDERSGLLMVFR
TYEKLSYGLVLYATRDLALMDKVKNP

Nucleotide

• Length: 1041 bp

>NTDB_id=893885 AAG092_RS11415 WP_110680573.1 2348971..2350011(-) (tsaP) [Pseudomonas alcaligenes strain Med1]
ATGAGGAAATCACTACTCGCCCTGTTGCTGGTCGCCGCGGGCGGTCTGGCGCAGACCGGCCTGGTCCAGGCAGCCGTCCA
GCTCAAGGAAGGTCATCCCGACCGCTACACCGTGGTCAAGGGCGACACCCTTTGGGATATCTCCGGCAAGTTCCTCAGCC
AACCCTGGAAGTGGCCTGAGCTGTGGCACGCCAACCCGCAGATCGAGAACCCCCACCTGATCTACCCGGGCGACACCCTG
AGCCTGGTGTATATCGACGGCCAGCCGCGCCTGATGCTCAACCGCGGCGAATCGCGCGGCACCATCAAGCTGTCGCCGCA
GGTGCGCAGCACGCCGATGGCCCAGGCCATTCCGACCATCCCGCTGGAGGCGATCAACAGCTTCCTGCTGAGCAACCGCA
TCGTCGACACCGCCGAGGACTTCAATGCCCGCCCCTACGTGGTGGCCGGCAACGCCGAGCGCGTGGTCAGCGGCGCCGGT
GATCGCATCTACGCCCGTGGCAGCTTCGAGGATGGCCAGGCGGTCTACGGCATCTTCCGCCAGGGCAAGATCTACACCGA
CCCGGAGACCGATGAGTTTCTCGGCATCAACGCCGACGACATCGGCACCGGCGAGGTGGTGGCCGAGGAGGGTGACATCG
CCACCCTCAGCCTGAGCCGCTCGACCCAGGAAGTGCGCCTGGGCGATCGCCTGTTCCCCACCGAGGAGCGCGCGGTCAAC
TCCACCTTCATGCCCAGCGAGCCGGCCACCGAGGTCGACGGTGTGATCCTCGACGTGCCGCGCGGGGTCAACCGTGTCGG
CCAGTTCGATGTGGTGACCATCAACAAGGGCAAGATCGACGGCCTCAACGAAGGCAACGTGCTGGCCGTGTACAAGACCG
GCGAGACCGTGCGCGACCGCGTCACCGGTGAGTCGGTGAAGATCCCGGACGAGCGCTCGGGCCTGCTGATGGTGTTCCGC
ACCTACGAGAAGCTCAGCTACGGCCTGGTCCTGTACGCCACCCGCGACCTGGCCCTGATGGACAAGGTGAAGAACCCGTA
A

Domains

Predicted by InterProScan.

• LysM domain (LysM) (36-81)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.387