Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   RJD36_RS01710 Genome accession   NZ_CP136943
Coordinates   308636..309121 (+) Length   161 a.a.
NCBI ID   WP_043910355.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 303636..314121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS01710 (RJD36_01710) comX/sigX 308636..309121 (+) 486 WP_043910355.1 sigma-70 family RNA polymerase sigma factor Regulator
  RJD36_RS01715 (RJD36_01715) - 309966..310229 (-) 264 WP_117479781.1 hypothetical protein -
  RJD36_RS01720 (RJD36_01720) - 310477..310617 (-) 141 WP_003063326.1 hypothetical protein -
  RJD36_RS01725 (RJD36_01725) - 310950..312311 (-) 1362 WP_003063329.1 aspartate kinase -
  RJD36_RS01730 (RJD36_01730) - 312406..313056 (+) 651 WP_003063332.1 HAD family phosphatase -
  RJD36_RS01735 (RJD36_01735) - 313252..314040 (+) 789 WP_003063335.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19448.34 Da        Isoelectric Point: 7.2744

>NTDB_id=893531 RJD36_RS01710 WP_043910355.1 308636..309121(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP082]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=893531 RJD36_RS01710 WP_043910355.1 308636..309121(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP082]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAATTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAATTTAAAAATAAT
TTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.