Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   RJD36_RS01400 Genome accession   NZ_CP136943
Coordinates   243938..244426 (+) Length   162 a.a.
NCBI ID   WP_043910349.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 238938..249426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS01400 (RJD36_01400) comX/sigX 243938..244426 (+) 489 WP_043910349.1 sigma-70 family RNA polymerase sigma factor Regulator
  RJD36_RS01405 (RJD36_01405) - 244559..244825 (+) 267 WP_003063199.1 ACT domain-containing protein -
  RJD36_RS01410 (RJD36_01410) - 244837..246174 (+) 1338 WP_058692716.1 PFL family protein -
  RJD36_RS01415 (RJD36_01415) - 246392..247096 (+) 705 WP_041973320.1 histidine phosphatase family protein -
  RJD36_RS01420 (RJD36_01420) - 247080..247853 (+) 774 WP_058692717.1 M15 family metallopeptidase -
  RJD36_RS01425 (RJD36_01425) - 247850..248431 (+) 582 WP_003063210.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19559.44 Da        Isoelectric Point: 7.2748

>NTDB_id=893527 RJD36_RS01400 WP_043910349.1 243938..244426(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP082]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFREN
SK

Nucleotide


Download         Length: 489 bp        

>NTDB_id=893527 RJD36_RS01400 WP_043910349.1 243938..244426(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP082]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAATTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAGTTTAGGGAAAAT
AGCAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.