Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RRV45_RS20600 Genome accession   NZ_CP135435
Coordinates   4161201..4161560 (-) Length   119 a.a.
NCBI ID   WP_315666519.1    Uniprot ID   A0AA96S5T4
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4156201..4166560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS20580 (RRV45_20580) - 4156390..4159203 (+) 2814 WP_315666515.1 DEAD/DEAH box helicase -
  RRV45_RS20585 (RRV45_20585) - 4159835..4160251 (-) 417 WP_315666516.1 hypothetical protein -
  RRV45_RS20590 (RRV45_20590) - 4160497..4160901 (+) 405 WP_315666517.1 helix-turn-helix transcriptional regulator -
  RRV45_RS20595 (RRV45_20595) - 4161003..4161197 (-) 195 WP_315666518.1 hypothetical protein -
  RRV45_RS20600 (RRV45_20600) ssbB 4161201..4161560 (-) 360 WP_315666519.1 single-stranded DNA-binding protein Machinery gene
  RRV45_RS20605 (RRV45_20605) - 4161853..4162287 (+) 435 WP_315666520.1 YwpF-like family protein -
  RRV45_RS20610 (RRV45_20610) - 4162351..4162668 (-) 318 WP_315666521.1 hypothetical protein -
  RRV45_RS20615 (RRV45_20615) fabZ 4162829..4163251 (-) 423 WP_315666522.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RRV45_RS20620 (RRV45_20620) - 4163368..4163532 (+) 165 WP_315666523.1 hypothetical protein -
  RRV45_RS20625 (RRV45_20625) - 4163573..4163845 (-) 273 WP_315666524.1 DNA-directed RNA polymerase subunit beta -
  RRV45_RS20630 (RRV45_20630) - 4163859..4164701 (-) 843 WP_315666525.1 flagellar hook-basal body protein -
  RRV45_RS20635 (RRV45_20635) - 4164748..4165569 (-) 822 WP_315666526.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13443.22 Da        Isoelectric Point: 9.5555

>NTDB_id=886490 RRV45_RS20600 WP_315666519.1 4161201..4161560(-) (ssbB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MINQVTLVGRLTKDPELKRTPEGTAVTNVTVAVNRQYRNQQGEIGADFVQCTLWKKTAENTSRYCRKGSLIGITGRIQTR
HYNNQEGTRVYVTEVLADSVRFLEQRRSEEALIPAGMEA

Nucleotide


Download         Length: 360 bp        

>NTDB_id=886490 RRV45_RS20600 WP_315666519.1 4161201..4161560(-) (ssbB) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGATTAATCAAGTAACGTTAGTTGGAAGGTTGACGAAGGATCCTGAGCTCAAAAGAACGCCTGAGGGGACAGCGGTCAC
CAATGTCACCGTGGCCGTGAACCGTCAGTACCGCAACCAGCAAGGAGAGATTGGTGCAGATTTTGTCCAATGCACCCTCT
GGAAAAAGACTGCCGAAAACACATCGCGTTATTGCCGGAAGGGCTCATTAATCGGAATTACCGGGAGAATTCAGACAAGG
CACTATAACAATCAAGAAGGAACCAGAGTTTATGTAACCGAGGTGTTAGCAGATTCTGTGAGATTTCTTGAACAAAGGCG
TTCAGAAGAGGCATTAATCCCCGCAGGAATGGAGGCGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.865

93.277

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

89.076

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

52.727

92.437

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.057

89.076

0.437
  ssbA Streptococcus mutans UA159

47.17

89.076

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

46.226

89.076

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.226

89.076

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

45.283

89.076

0.403
  ssbB/cilA Streptococcus pneumoniae D39

45.283

89.076

0.403
  ssbB/cilA Streptococcus pneumoniae R6

45.283

89.076

0.403
  ssbB/cilA Streptococcus mitis SK321

45.283

89.076

0.403
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

88.235

0.378
  ssb Vibrio cholerae strain A1552

35.833

100

0.361