Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   RMP67_RS00890 Genome accession   NZ_CP135087
Coordinates   155180..156130 (+) Length   316 a.a.
NCBI ID   WP_105140681.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150180..161130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00875 (RMP67_00875) - 152937..153305 (+) 369 WP_313920907.1 DUF1033 family protein -
  RMP67_RS00880 (RMP67_00880) tnpA 153441..153915 (-) 475 Protein_139 IS200/IS605 family transposase -
  RMP67_RS00885 (RMP67_00885) - 154144..155094 (-) 951 WP_313920908.1 LD-carboxypeptidase -
  RMP67_RS00890 (RMP67_00890) comYA 155180..156130 (+) 951 WP_105140681.1 competence type IV pilus ATPase ComGA Machinery gene
  RMP67_RS00895 (RMP67_00895) comYB 156042..157079 (+) 1038 WP_313921433.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMP67_RS00900 (RMP67_00900) comYC 157081..157362 (+) 282 WP_313920909.1 competence type IV pilus major pilin ComGC Machinery gene
  RMP67_RS00905 (RMP67_00905) comGD 157343..157750 (+) 408 WP_313920910.1 competence type IV pilus minor pilin ComGD -
  RMP67_RS00910 (RMP67_00910) comYE 157722..158015 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMP67_RS00915 (RMP67_00915) comGF/cglF 158002..158436 (+) 435 WP_024395445.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMP67_RS00920 (RMP67_00920) comGG 158414..158941 (+) 528 WP_313920911.1 competence type IV pilus minor pilin ComGG -
  RMP67_RS00925 (RMP67_00925) comYH 158997..159950 (+) 954 WP_105105703.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35506.30 Da        Isoelectric Point: 5.4746

>NTDB_id=884859 RMP67_RS00890 WP_105140681.1 155180..156130(+) (comYA) [Streptococcus suis strain ID26102]
MIQEKARKLIEEAVADRVSDIYLVPRGQDYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSANQWNEQIDRLFAAGHISLRQAETEKITLGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=884859 RMP67_RS00890 WP_105140681.1 155180..156130(+) (comYA) [Streptococcus suis strain ID26102]
ATGATTCAAGAAAAAGCAAGAAAGTTGATTGAAGAGGCGGTGGCGGATAGGGTCAGTGATATTTATCTGGTTCCTCGTGG
TCAGGACTACCAAGTCTACCATCGCATCATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAGGAGGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGATTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTGATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCTGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAGCAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCTAC
CTACGATAATCTGATTAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAGATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACGGGAGCTACAGTTTTCTCAACAGTTCATGCAAGGTCTATTTCAGGTGTCTAT
GCTCGTATGTTGGAACTGGGGGTCAGCCCTGAGGAGTTAAACAATGCCCTTCAAGGGATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAAGGAAATTACCAAAACCATTCCGCAAACCAGTGGAATGAACAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.595

98.418

0.646
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.484

98.101

0.642
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.952

98.418

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

53.943

100

0.541
  comGA Latilactobacillus sakei subsp. sakei 23K

41.516

87.658

0.364