Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RMP67_RS00925 | Genome accession | NZ_CP135087 |
| Coordinates | 158997..159950 (+) | Length | 317 a.a. |
| NCBI ID | WP_105105703.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain ID26102 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 153997..164950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RMP67_RS00885 (RMP67_00885) | - | 154144..155094 (-) | 951 | WP_313920908.1 | LD-carboxypeptidase | - |
| RMP67_RS00890 (RMP67_00890) | comYA | 155180..156130 (+) | 951 | WP_105140681.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RMP67_RS00895 (RMP67_00895) | comYB | 156042..157079 (+) | 1038 | WP_313921433.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RMP67_RS00900 (RMP67_00900) | comYC | 157081..157362 (+) | 282 | WP_313920909.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RMP67_RS00905 (RMP67_00905) | comGD | 157343..157750 (+) | 408 | WP_313920910.1 | competence type IV pilus minor pilin ComGD | - |
| RMP67_RS00910 (RMP67_00910) | comYE | 157722..158015 (+) | 294 | WP_024413203.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RMP67_RS00915 (RMP67_00915) | comGF/cglF | 158002..158436 (+) | 435 | WP_024395445.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RMP67_RS00920 (RMP67_00920) | comGG | 158414..158941 (+) | 528 | WP_313920911.1 | competence type IV pilus minor pilin ComGG | - |
| RMP67_RS00925 (RMP67_00925) | comYH | 158997..159950 (+) | 954 | WP_105105703.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RMP67_RS00930 (RMP67_00930) | - | 160000..161187 (+) | 1188 | WP_313920912.1 | acetate kinase | - |
| RMP67_RS00935 (RMP67_00935) | - | 161263..162126 (-) | 864 | WP_313920913.1 | IS982 family transposase | - |
| RMP67_RS00940 (RMP67_00940) | - | 162471..162644 (+) | 174 | WP_313920914.1 | hypothetical protein | - |
| RMP67_RS00945 (RMP67_00945) | - | 162684..163022 (+) | 339 | WP_398584275.1 | folate family ECF transporter S component | - |
| RMP67_RS00950 (RMP67_00950) | - | 163078..164334 (+) | 1257 | WP_313920915.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35760.84 Da Isoelectric Point: 4.4133
>NTDB_id=884864 RMP67_RS00925 WP_105105703.1 158997..159950(+) (comYH) [Streptococcus suis strain ID26102]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=884864 RMP67_RS00925 WP_105105703.1 158997..159950(+) (comYH) [Streptococcus suis strain ID26102]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTTATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCCATCGGATTTATCCTATCTTTTTTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTTATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCCATCGGATTTATCCTATCTTTTTTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |