Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RMP67_RS00910 Genome accession   NZ_CP135087
Coordinates   157722..158015 (+) Length   97 a.a.
NCBI ID   WP_024413203.1    Uniprot ID   A0AAP6A856
Organism   Streptococcus suis strain ID26102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152722..163015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00875 (RMP67_00875) - 152937..153305 (+) 369 WP_313920907.1 DUF1033 family protein -
  RMP67_RS00880 (RMP67_00880) tnpA 153441..153915 (-) 475 Protein_139 IS200/IS605 family transposase -
  RMP67_RS00885 (RMP67_00885) - 154144..155094 (-) 951 WP_313920908.1 LD-carboxypeptidase -
  RMP67_RS00890 (RMP67_00890) comYA 155180..156130 (+) 951 WP_105140681.1 competence type IV pilus ATPase ComGA Machinery gene
  RMP67_RS00895 (RMP67_00895) comYB 156042..157079 (+) 1038 WP_313921433.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMP67_RS00900 (RMP67_00900) comYC 157081..157362 (+) 282 WP_313920909.1 competence type IV pilus major pilin ComGC Machinery gene
  RMP67_RS00905 (RMP67_00905) comGD 157343..157750 (+) 408 WP_313920910.1 competence type IV pilus minor pilin ComGD -
  RMP67_RS00910 (RMP67_00910) comYE 157722..158015 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMP67_RS00915 (RMP67_00915) comGF/cglF 158002..158436 (+) 435 WP_024395445.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMP67_RS00920 (RMP67_00920) comGG 158414..158941 (+) 528 WP_313920911.1 competence type IV pilus minor pilin ComGG -
  RMP67_RS00925 (RMP67_00925) comYH 158997..159950 (+) 954 WP_105105703.1 class I SAM-dependent methyltransferase Machinery gene
  RMP67_RS00930 (RMP67_00930) - 160000..161187 (+) 1188 WP_313920912.1 acetate kinase -
  RMP67_RS00935 (RMP67_00935) - 161263..162126 (-) 864 WP_313920913.1 IS982 family transposase -
  RMP67_RS00940 (RMP67_00940) - 162471..162644 (+) 174 WP_313920914.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10727.62 Da        Isoelectric Point: 9.8358

>NTDB_id=884862 RMP67_RS00910 WP_024413203.1 157722..158015(+) (comYE) [Streptococcus suis strain ID26102]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=884862 RMP67_RS00910 WP_024413203.1 157722..158015(+) (comYE) [Streptococcus suis strain ID26102]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTAGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

100

0.546
  comYE Streptococcus mutans UA159

54.639

100

0.546
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381