Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RMP67_RS00895 Genome accession   NZ_CP135087
Coordinates   156042..157079 (+) Length   345 a.a.
NCBI ID   WP_313921433.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151042..162079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00875 (RMP67_00875) - 152937..153305 (+) 369 WP_313920907.1 DUF1033 family protein -
  RMP67_RS00880 (RMP67_00880) tnpA 153441..153915 (-) 475 Protein_139 IS200/IS605 family transposase -
  RMP67_RS00885 (RMP67_00885) - 154144..155094 (-) 951 WP_313920908.1 LD-carboxypeptidase -
  RMP67_RS00890 (RMP67_00890) comYA 155180..156130 (+) 951 WP_105140681.1 competence type IV pilus ATPase ComGA Machinery gene
  RMP67_RS00895 (RMP67_00895) comYB 156042..157079 (+) 1038 WP_313921433.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMP67_RS00900 (RMP67_00900) comYC 157081..157362 (+) 282 WP_313920909.1 competence type IV pilus major pilin ComGC Machinery gene
  RMP67_RS00905 (RMP67_00905) comGD 157343..157750 (+) 408 WP_313920910.1 competence type IV pilus minor pilin ComGD -
  RMP67_RS00910 (RMP67_00910) comYE 157722..158015 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMP67_RS00915 (RMP67_00915) comGF/cglF 158002..158436 (+) 435 WP_024395445.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMP67_RS00920 (RMP67_00920) comGG 158414..158941 (+) 528 WP_313920911.1 competence type IV pilus minor pilin ComGG -
  RMP67_RS00925 (RMP67_00925) comYH 158997..159950 (+) 954 WP_105105703.1 class I SAM-dependent methyltransferase Machinery gene
  RMP67_RS00930 (RMP67_00930) - 160000..161187 (+) 1188 WP_313920912.1 acetate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39063.08 Da        Isoelectric Point: 9.3127

>NTDB_id=884860 RMP67_RS00895 WP_313921433.1 156042..157079(+) (comYB) [Streptococcus suis strain ID26102]
MNKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADLYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLVFLFLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLCGLSLVLVLAGLVWFRKTSKIKAFSRLAAMPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEEFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=884860 RMP67_RS00895 WP_313921433.1 156042..157079(+) (comYB) [Streptococcus suis strain ID26102]
ATGAACAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCTCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTACTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TGGTTTTTCTGTTCTTGATTATGCTAGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCGTG
CTAATTAACCATCTGCCGACTATCTTTCTATCCCTCTGTGGACTTAGTTTGGTGTTGGTCTTAGCTGGTCTTGTTTGGTT
TCGCAAAACTAGCAAAATCAAGGCATTTTCCCGCTTAGCAGCTATGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAGGAA
CAACAATCGCAACTCTTTCGGGAGATTGGGCAGGACCTGGAGCAGTCGCTTTCTAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTCTATGCGGCTGAGTGTTGGGAGGAATTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATTTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.45

99.13

0.629
  comGB/cglB Streptococcus mitis SK321

61.31

97.391

0.597
  comGB/cglB Streptococcus mitis NCTC 12261

60.597

97.101

0.588
  comYB Streptococcus mutans UA140

59.238

98.841

0.586
  comYB Streptococcus mutans UA159

59.238

98.841

0.586
  comGB/cglB Streptococcus pneumoniae Rx1

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae R6

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae TIGR4

60

97.101

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

97.681

0.501