Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RHP74_RS26585 | Genome accession | NZ_CP134498 |
| Coordinates | 5788385..5788792 (-) | Length | 135 a.a. |
| NCBI ID | WP_311096685.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. SG20052 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5783385..5793792
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RHP74_RS26570 (RHP74_26570) | - | 5784183..5787137 (+) | 2955 | WP_311096684.1 | DUF748 domain-containing protein | - |
| RHP74_RS26575 (RHP74_26575) | - | 5787137..5787433 (+) | 297 | WP_154501766.1 | DUF2845 domain-containing protein | - |
| RHP74_RS26580 (RHP74_26580) | - | 5787719..5788072 (-) | 354 | WP_010467586.1 | BON domain-containing protein | - |
| RHP74_RS26585 (RHP74_26585) | pilA | 5788385..5788792 (-) | 408 | WP_311096685.1 | pilin | Machinery gene |
| RHP74_RS26590 (RHP74_26590) | pilB | 5789018..5790718 (+) | 1701 | WP_010467584.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| RHP74_RS26595 (RHP74_26595) | pilC | 5790721..5791938 (+) | 1218 | WP_010467583.1 | type II secretion system F family protein | Machinery gene |
| RHP74_RS26600 (RHP74_26600) | pilD | 5791940..5792812 (+) | 873 | WP_311096686.1 | A24 family peptidase | Machinery gene |
| RHP74_RS26605 (RHP74_26605) | coaE | 5792809..5793432 (+) | 624 | WP_042932554.1 | dephospho-CoA kinase | - |
| RHP74_RS26610 (RHP74_26610) | yacG | 5793429..5793629 (+) | 201 | WP_154913029.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13814.95 Da Isoelectric Point: 7.5892
>NTDB_id=880543 RHP74_RS26585 WP_311096685.1 5788385..5788792(-) (pilA) [Pseudomonas sp. SG20052]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVDQEYAPKGCTGV
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVDQEYAPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=880543 RHP74_RS26585 WP_311096685.1 5788385..5788792(-) (pilA) [Pseudomonas sp. SG20052]
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGATCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGATCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50 |
100 |
0.511 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.175 |
100 |
0.489 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.958 |
100 |
0.452 |
| pilA | Vibrio cholerae strain A1552 |
42.958 |
100 |
0.452 |
| pilA | Vibrio cholerae C6706 |
42.958 |
100 |
0.452 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.444 |
100 |
0.444 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
36.054 |
100 |
0.393 |
| pilA2 | Legionella pneumophila str. Paris |
37.778 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.037 |
100 |
0.37 |