Detailed information NTG0880546

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHP74_RS26600
• Genome accession: NZ_CP134498
• Coordinates: 5791940..5792812 (+)
• Length: 290 a.a.
• NCBI ID: WP_311096686.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SG20052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5786940..5797812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHP74_RS26575 (RHP74_26575)	-	5787137..5787433 (+)	297	WP_154501766.1	DUF2845 domain-containing protein	-
RHP74_RS26580 (RHP74_26580)	-	5787719..5788072 (-)	354	WP_010467586.1	BON domain-containing protein	-
RHP74_RS26585 (RHP74_26585)	pilA	5788385..5788792 (-)	408	WP_311096685.1	pilin	Machinery gene
RHP74_RS26590 (RHP74_26590)	pilB	5789018..5790718 (+)	1701	WP_010467584.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHP74_RS26595 (RHP74_26595)	pilC	5790721..5791938 (+)	1218	WP_010467583.1	type II secretion system F family protein	Machinery gene
RHP74_RS26600 (RHP74_26600)	pilD	5791940..5792812 (+)	873	WP_311096686.1	A24 family peptidase	Machinery gene
RHP74_RS26605 (RHP74_26605)	coaE	5792809..5793432 (+)	624	WP_042932554.1	dephospho-CoA kinase	-
RHP74_RS26610 (RHP74_26610)	yacG	5793429..5793629 (+)	201	WP_154913029.1	DNA gyrase inhibitor YacG	-
RHP74_RS26615 (RHP74_26615)	-	5793633..5793848 (-)	216	WP_010467577.1	hypothetical protein	-
RHP74_RS26620 (RHP74_26620)	-	5793912..5794601 (-)	690	WP_083375730.1	energy-coupling factor ABC transporter permease	-
RHP74_RS26625 (RHP74_26625)	-	5794598..5795065 (-)	468	WP_010467572.1	hypothetical protein	-
RHP74_RS26630 (RHP74_26630)	-	5795195..5795821 (+)	627	WP_007970534.1	DUF1780 domain-containing protein	-
RHP74_RS26635 (RHP74_26635)	-	5795818..5796345 (+)	528	WP_010467568.1	MOSC domain-containing protein	-
RHP74_RS26640 (RHP74_26640)	-	5796397..5796570 (+)	174	WP_008028730.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32137.51 Da
• Isoelectric Point: 8.2577

>NTDB_id=880546 RHP74_RS26600 WP_311096686.1 5791940..5792812(+) (pilD) [Pseudomonas sp. SG20052]
MPLNEVLILYPLVFVVIALAVGLLVGSFLNVVVWRLPKMLQREWRLQAHDVLGVPPEAPGPAYNLMLPHSHCPQCDHRIR
AWENIPLLSYLFLRGRCSNCAAPISKRYPLTELACGLLSGFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNAQTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=880546 RHP74_RS26600 WP_311096686.1 5791940..5792812(+) (pilD) [Pseudomonas sp. SG20052]
ATGCCCTTGAACGAAGTCCTGATCCTCTATCCGCTGGTGTTCGTGGTCATCGCCTTGGCAGTCGGCCTGCTGGTAGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCCAACGCGAATGGCGGCTGCAAGCCCATGACGTGTTGGGTG
TTCCGCCCGAGGCACCGGGCCCCGCCTACAACTTGATGCTGCCTCATTCCCACTGCCCGCAGTGCGACCATCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATCTGTTTTTACGGGGTCGATGCTCGAACTGCGCCGCGCCAATCAGCAAACG
TTATCCGCTGACTGAACTGGCCTGCGGTCTGCTCTCGGGGTTTATCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTA
CTGCCACTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCACTGCATGAGGCATTGTGGGGCGCAGT
GGCCGGTTATATGACCTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGTTACTGGCCCTGCTCGGGGCCTGGGGCGGCTGGCAGATATTGCCGTTGACCATTCTGCTGTCATCGCTCGTGGGG
GCCATCATCGGGGTGATTTTGCTGCGACTGCGCAATGCGCAAACCTCGACTCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.982	98.276	0.521
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445