Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QQE96_RS07695 Genome accession   NZ_CP133987
Coordinates   516304..517950 (+) Length   548 a.a.
NCBI ID   WP_372586270.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511304..522950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS07675 (QQE96_07755) pilM 513521..514537 (+) 1017 WP_168520831.1 type IV pilus assembly protein PilM Machinery gene
  QQE96_RS07680 (QQE96_07760) pilN 514521..515123 (+) 603 WP_168520833.1 PilN domain-containing protein Machinery gene
  QQE96_RS07685 (QQE96_07765) pilO 515116..515709 (+) 594 WP_168520835.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQE96_RS07690 (QQE96_07770) pilP 515696..516214 (+) 519 WP_168520837.1 pilus assembly protein PilP Machinery gene
  QQE96_RS07695 (QQE96_07775) pilQ 516304..517950 (+) 1647 WP_372586270.1 type IV pilus secretin PilQ Machinery gene
  QQE96_RS07700 (QQE96_07780) aroK 518137..518658 (+) 522 WP_053309563.1 shikimate kinase AroK -
  QQE96_RS07705 (QQE96_07785) aroB 518683..519771 (+) 1089 WP_168520841.1 3-dehydroquinate synthase -
  QQE96_RS07710 (QQE96_07790) - 519820..521319 (+) 1500 WP_168520843.1 SPOR domain-containing protein -
  QQE96_RS07715 (QQE96_07795) - 521389..522216 (+) 828 WP_053309560.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 548 a.a.        Molecular weight: 59899.58 Da        Isoelectric Point: 4.6204

>NTDB_id=878100 QQE96_RS07695 WP_372586270.1 516304..517950(+) (pilQ) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MVSLSIAAQAQLHNELKHIDFRVNKNQEAVLIVELVSPSVAVNVQKATKGLSIELLETKVLDEKLSVLDVQDFATLVESI
EVFRKESNTQLLVTINGQYQYDYRLKGKYLEVVMSPLTQEEPPQNKQLLAAEGKLISINFQDIPVRSVLQLIADYNEFNL
VVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVIIVAPKQELDSREKQQLEKARLAEELGDLHSEIININFAK
ASDIAEMIGGEGPLSMLSQRGSISVDERTNSLLIRELPDNISVIRHIIAALDIPVKQVQIEARIVAVNEGNLDELGVRWG
FTSTNGDNTVGGSIESNLFQAGLLNENTLPVDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISS
PRLITTNKKPAYIEQGTEIPYLESSSSGATSVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINT
QRIGTQVLVNNGETVVLGGIFQHSISNTVDKVPLLGDLPLLGVLFRRSYEQVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1647 bp        

>NTDB_id=878100 QQE96_RS07695 WP_372586270.1 516304..517950(+) (pilQ) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGGTTAGCCTAAGTATTGCTGCGCAGGCTCAGTTGCATAATGAACTCAAGCATATCGATTTTCGAGTCAATAAAAACCA
AGAGGCGGTATTGATTGTTGAGCTTGTCTCGCCATCGGTAGCGGTTAATGTGCAAAAAGCGACAAAAGGCCTAAGCATTG
AATTACTAGAAACCAAGGTGCTAGACGAAAAGCTATCTGTATTGGATGTGCAAGATTTTGCAACGTTAGTGGAAAGCATA
GAAGTCTTTCGTAAAGAATCGAACACACAGTTATTGGTTACCATCAATGGTCAATACCAGTACGATTACCGTTTAAAGGG
AAAGTATCTTGAGGTGGTCATGAGTCCACTCACTCAAGAAGAACCGCCACAAAATAAACAACTATTGGCAGCCGAAGGAA
AATTAATTTCGATTAACTTCCAAGACATTCCGGTGCGTAGTGTGTTGCAACTTATCGCGGACTATAACGAGTTCAATTTA
GTGGTGTCTGACTCGGTTGTTGGCAACCTGACACTGCGCCTTGATGGTGTACCCTGGCAGCAAGTCCTTGATATTATTTT
ACAAGTGAAAGGGTTAGATAAGCGCGTTGAAGGCAATGTGATTATAGTGGCTCCTAAGCAGGAATTAGACAGTAGAGAAA
AGCAGCAATTAGAAAAGGCACGTTTGGCTGAAGAGTTAGGGGATCTTCACTCTGAGATTATTAATATTAACTTTGCTAAA
GCATCGGATATTGCCGAAATGATCGGTGGCGAAGGTCCCCTGAGCATGCTTTCTCAGCGCGGTTCAATTAGCGTTGATGA
ACGAACAAATTCGCTACTAATCCGCGAGCTTCCCGATAATATTAGTGTAATTCGGCACATTATCGCAGCACTTGATATTC
CGGTGAAACAAGTGCAAATCGAAGCAAGAATTGTGGCCGTCAATGAAGGTAACTTAGATGAACTCGGCGTGCGTTGGGGT
TTTACATCGACCAATGGTGACAACACGGTAGGAGGAAGTATTGAAAGTAATTTGTTCCAAGCTGGTTTGTTAAATGAAAA
TACATTGCCAGTTGATGATTTTTTGAATGTAAACCTTGCCGCAACATCAGCTAATGCCTCAAGTATCGCTTTTCAGGTGG
CGAAGCTTGGGTCTGATTTGTTGTTGGATTTAGAGCTTTCAGCCCTACAGCGCGAATCAAAAGCAGAAATTATTTCGAGT
CCTCGCTTGATCACCACCAATAAAAAACCGGCCTATATCGAACAAGGGACAGAAATTCCTTATCTCGAATCTTCCTCTAG
CGGCGCAACCAGCGTTTCTTTTAAAAAAGCAGTACTGAGCCTAAAAGTCACACCACAAATCACTCCAGACAACCGTTTAG
TGTTGGATTTGAGTGTGACTCAAGATAGACCAGGGGAAGTGGTCAAAACGGGTACAGGAGAAGCGGTAGCCATCAACACA
CAGCGTATTGGCACACAAGTACTGGTTAATAATGGTGAAACCGTTGTTTTGGGTGGGATATTTCAACACAGCATTAGTAA
TACGGTTGATAAAGTACCGCTGTTGGGGGACTTGCCTTTACTCGGTGTTTTATTCCGTCGTTCTTATGAACAAGTGGGCA
AAAGTGAGCTACTTATTTTTGTGACTCCCAAGGTTGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(388-546)

Bacterial type II/III secretion system short domain (Secretin_N)

(232-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

80.403

99.635

0.801
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.403

99.635

0.801
  pilQ Vibrio campbellii strain DS40M4

76.407

100

0.768
  pilQ Legionella pneumophila strain Lp02

42.989

98.905

0.425
  pilQ Legionella pneumophila strain ERS1305867

42.989

98.905

0.425
  comQ Acinetobacter baylyi ADP1

39.965

100

0.414
  pilQ Pseudomonas aeruginosa PAK

40.399

100

0.407
  pilQ Acinetobacter baumannii strain A118

37.037

100

0.401
  pilQ Acinetobacter baumannii D1279779

37.037

100

0.401