Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   QQE96_RS10675 Genome accession   NZ_CP133987
Coordinates   1126080..1129424 (+) Length   1114 a.a.
NCBI ID   WP_246203156.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121080..1134424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS10650 (QQE96_10725) sucC 1121263..1122429 (+) 1167 WP_053311817.1 ADP-forming succinate--CoA ligase subunit beta -
  QQE96_RS10655 (QQE96_10730) sucD 1122429..1123301 (+) 873 WP_053311816.1 succinate--CoA ligase subunit alpha -
  QQE96_RS10660 (QQE96_10735) znuB 1123373..1124152 (-) 780 WP_053311815.1 zinc ABC transporter permease subunit ZnuB -
  QQE96_RS10665 (QQE96_10740) znuC 1124145..1124930 (-) 786 WP_168521485.1 zinc ABC transporter ATP-binding protein ZnuC -
  QQE96_RS10670 (QQE96_10745) znuA 1125015..1125893 (+) 879 WP_168521487.1 zinc ABC transporter substrate-binding protein ZnuA -
  QQE96_RS10675 (QQE96_10750) tfoS 1126080..1129424 (+) 3345 WP_246203156.1 helix-turn-helix domain-containing protein Regulator
  QQE96_RS10680 (QQE96_10755) - 1130019..1130246 (+) 228 WP_053311811.1 FeoA family protein -
  QQE96_RS10685 (QQE96_10760) feoB 1130246..1132519 (+) 2274 WP_168521491.1 Fe(2+) transporter permease subunit FeoB -
  QQE96_RS10690 (QQE96_10765) - 1132516..1132746 (+) 231 WP_168521493.1 FeoC-like transcriptional regulator -
  QQE96_RS10695 (QQE96_10770) - 1132801..1133229 (-) 429 WP_053311808.1 HIT family protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126948.61 Da        Isoelectric Point: 6.4850

>NTDB_id=878102 QQE96_RS10675 WP_246203156.1 1126080..1129424(+) (tfoS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MYSKYLSQVLCLLLLLLAWYAQALDKAPSIFYPLPTQAQGKVFVAQNLFLGDEGGIWIHDVHGKVVFFDGQNILPRRGSV
LAQDSGHIAYFDNAFWSYVENEVYRTYPAQHRELVFSLTAGSVIKNIGASNGFIWLTDDAHFYTYNIQTKRIDTYPLSDM
YQFNQVSQLTINDAKFLLSKWVLATNAGVYLSDGERFSHVLSSKKHFIEKLYFSAKNRELIVGTLNGALIIDIKNPNSQQ
PKRIGYSHVLSLAETDNEYWVGTEDGLFVYSFLTNNVVKLESNDQDSNGLPGNQIYSLVNDLQGGIWIATDKGIRYFSLF
GFRFERNQQPQLIHNQIKKIIPRLDKKGYWVLTNQGLYQFDSNRNKIKLLFNLPINDFVQLSNTSLWLATHEGLVVYNLE
TEAEESSHLPFNLRTAGILHLTLDNNGLLWGANENQLWSYDVGANTLTNYGIDWFVDAFLPAKVTLLKATQRGLFIGTDH
GVYTLNQGKIVFRRPTSGYGRSVNILEGSNGDIWFASSYGLFNLSHDRNEFNSIPLAEDNISPKCLAESQEGIWLTSSNG
ISLYNQQGDIKKHYAAPHGLIHNEFQSGVCTSSIIDNKAWLLSGSRFGLLRVSPGKLVTATPPNTSIIFSQISIDHTPVM
IGRSRFHPLELKYGSSISFLFGSLPESRTQSLEFRIEGDGQWQPLEGSQLTLDHLLPGDYRILVRDNTQYPQNSTMNSLS
FVVAKPWYLSSWAILFYSIIVLGCVAVASLWRSHWVAKANRELKSQVALKTEQLRHQSKIVLTNNHQLRKQLQIRHVFVE
QMLDSISPTLDQLIYRTQLNQLGRLERLAQKVKRELTLLRNVRSDKASTQQIYDLSIILNSSIDSWRDEFDKAEITLVVN
NELKQSYIESESFNFDLIFNTLLSDAVNRLYRNQSLQIHCYERERRLFVVIIDSGDQMMNSSVDGSTSGFEQEELHQLMR
SSGGEIHIFSSSERNLTELSWPSVDLLTEESEAIELEDAAEKVTIDPLEKEWLKKVELLIQQYYSDPEFSTSSAAKLLFV
SERSLQRRFKAVTGKTFKEYLNEVRLEKACQRLLAGEKISQVAFDSGFNDPSYFSQRFKHHFGLSPTQFIDDNE

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=878102 QQE96_RS10675 WP_246203156.1 1126080..1129424(+) (tfoS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
TTGTATTCCAAATATTTGAGTCAGGTTTTGTGCTTACTACTTCTGTTATTGGCGTGGTATGCACAAGCCCTGGACAAAGC
CCCTTCGATTTTTTACCCCTTGCCAACCCAAGCTCAAGGCAAAGTCTTTGTTGCCCAAAACTTATTCTTGGGTGATGAAG
GGGGGATATGGATACACGATGTTCATGGTAAAGTGGTGTTCTTTGATGGACAAAATATCCTTCCTCGTCGCGGCTCAGTA
CTGGCACAAGACAGCGGTCACATTGCTTATTTCGATAATGCTTTTTGGTCTTACGTTGAGAATGAAGTTTATCGTACTTA
CCCAGCCCAACACCGAGAGCTTGTTTTCAGCCTCACAGCCGGTTCAGTTATAAAAAATATAGGTGCTTCTAACGGTTTTA
TTTGGTTAACCGATGACGCACATTTTTACACCTATAATATCCAGACAAAAAGAATTGATACTTATCCGTTGTCGGATATG
TATCAATTCAACCAAGTCAGTCAATTGACAATCAATGATGCTAAATTTCTATTGTCAAAGTGGGTGCTAGCAACCAATGC
TGGTGTTTATTTATCTGATGGCGAAAGATTTTCTCATGTATTGAGCTCGAAGAAGCATTTTATTGAAAAGCTTTATTTTT
CTGCAAAAAACAGAGAGCTTATCGTTGGTACGCTGAACGGAGCGCTCATTATCGATATAAAAAATCCAAATTCCCAACAA
CCAAAACGGATTGGATATTCACACGTATTATCATTGGCTGAAACCGACAACGAATATTGGGTTGGCACCGAAGATGGTCT
ATTCGTCTACTCATTTTTGACCAACAATGTAGTTAAATTGGAAAGTAATGATCAAGACAGCAATGGTTTGCCAGGTAATC
AAATTTACTCTTTAGTCAATGATTTGCAAGGCGGTATTTGGATAGCAACGGATAAAGGAATTCGCTATTTTTCGCTTTTT
GGGTTTCGTTTCGAACGCAACCAGCAACCACAGTTAATTCATAATCAAATTAAGAAAATTATTCCACGGTTAGATAAGAA
AGGCTATTGGGTATTAACCAATCAAGGTCTCTACCAATTCGATAGCAATAGGAACAAGATTAAGCTTTTGTTCAACCTGC
CAATAAATGATTTTGTGCAATTGAGTAACACATCGTTATGGCTTGCCACCCATGAAGGTCTTGTTGTCTATAACTTAGAA
ACTGAGGCGGAGGAATCTTCTCATTTGCCCTTTAATCTACGCACGGCAGGTATCCTACACCTAACCCTTGATAATAACGG
TTTATTATGGGGAGCGAATGAGAACCAACTGTGGTCCTATGATGTTGGTGCTAATACGTTGACTAATTACGGTATCGATT
GGTTTGTTGACGCCTTTCTACCGGCTAAAGTGACCTTATTAAAAGCGACTCAGCGTGGTCTGTTTATCGGGACAGACCAT
GGTGTTTATACCTTAAATCAAGGTAAGATCGTTTTTCGACGGCCAACAAGTGGTTATGGGCGCAGTGTCAATATACTTGA
AGGGAGCAATGGGGATATCTGGTTTGCGAGTAGTTACGGTTTGTTTAACCTTTCTCATGACAGGAATGAATTTAATTCAA
TCCCTTTGGCCGAGGATAATATCAGCCCTAAATGCTTAGCCGAATCACAAGAAGGAATATGGCTGACTTCATCGAATGGT
ATCTCTCTTTATAATCAACAAGGCGATATAAAAAAACACTATGCTGCACCTCACGGTCTTATTCATAATGAATTTCAAAG
TGGGGTTTGTACATCAAGTATTATTGATAATAAAGCGTGGTTGTTGTCTGGTTCCCGTTTTGGTCTGCTTAGGGTATCAC
CGGGTAAACTTGTTACGGCTACCCCCCCAAATACGTCGATTATTTTTAGCCAAATAAGTATCGATCATACGCCAGTGATG
ATTGGTCGTAGCCGTTTTCACCCTCTAGAACTGAAATATGGTAGCTCGATTAGTTTTTTATTTGGTTCTTTACCTGAATC
CCGAACCCAATCGCTTGAATTTCGTATTGAAGGCGATGGCCAGTGGCAACCGCTAGAGGGTTCGCAATTAACGCTGGATC
ATTTACTTCCTGGTGACTACCGAATTTTAGTTAGAGACAACACTCAATATCCACAAAACAGCACAATGAACAGCTTATCA
TTTGTTGTTGCTAAGCCGTGGTATCTTTCATCATGGGCAATCTTGTTTTACAGCATTATAGTATTGGGCTGTGTTGCTGT
AGCCTCTTTATGGCGTTCGCATTGGGTGGCGAAAGCGAACAGAGAATTGAAATCACAAGTGGCATTGAAGACGGAACAAT
TGCGCCATCAAAGTAAAATTGTACTCACTAACAACCACCAATTACGTAAGCAGCTACAAATTCGACATGTTTTTGTGGAA
CAGATGCTAGATTCAATTTCACCTACTCTAGATCAGTTGATTTATCGTACCCAACTCAATCAACTTGGTCGTTTAGAACG
TCTTGCACAAAAAGTGAAACGAGAACTTACGCTATTACGGAATGTGAGAAGTGATAAAGCTTCCACTCAGCAAATTTATG
ATTTATCGATCATTCTTAACTCATCAATCGACAGTTGGCGAGATGAATTCGATAAAGCCGAAATCACATTAGTCGTAAAT
AATGAGCTCAAGCAATCTTACATTGAATCTGAAAGCTTTAATTTTGATTTAATTTTCAATACGTTACTGTCTGATGCTGT
TAATCGTCTATATCGCAATCAATCATTACAGATCCACTGCTATGAGCGTGAAAGACGTTTATTTGTTGTTATTATTGATA
GTGGTGATCAAATGATGAACTCAAGCGTTGACGGCTCTACTTCCGGTTTTGAACAAGAAGAGTTACATCAATTAATGCGA
TCTTCAGGTGGTGAAATCCATATTTTTTCTTCTTCAGAGCGAAACTTGACAGAGCTGTCTTGGCCTAGTGTGGATTTATT
AACAGAAGAGTCTGAAGCCATTGAACTGGAAGATGCCGCAGAGAAGGTAACGATTGACCCGCTGGAGAAAGAGTGGCTCA
AAAAAGTTGAACTGCTGATACAGCAATACTATTCCGACCCTGAATTCAGTACATCATCGGCCGCTAAGCTCTTATTTGTT
TCAGAGAGAAGCCTTCAACGACGTTTTAAAGCTGTTACTGGAAAAACCTTCAAAGAGTATTTGAATGAGGTTCGCTTAGA
AAAAGCATGTCAGCGTTTATTAGCTGGTGAAAAAATATCTCAAGTTGCTTTCGACAGTGGTTTTAATGATCCCTCCTACT
TTAGCCAAAGATTCAAACATCACTTTGGTTTATCTCCGACTCAGTTTATTGATGACAACGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1035-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

48.921

99.82

0.488