Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QQE96_RS07685 Genome accession   NZ_CP133987
Coordinates   515116..515709 (+) Length   197 a.a.
NCBI ID   WP_168520835.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510116..520709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS07670 (QQE96_07750) - 510858..513377 (-) 2520 WP_168520829.1 penicillin-binding protein 1A -
  QQE96_RS07675 (QQE96_07755) pilM 513521..514537 (+) 1017 WP_168520831.1 type IV pilus assembly protein PilM Machinery gene
  QQE96_RS07680 (QQE96_07760) pilN 514521..515123 (+) 603 WP_168520833.1 PilN domain-containing protein Machinery gene
  QQE96_RS07685 (QQE96_07765) pilO 515116..515709 (+) 594 WP_168520835.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQE96_RS07690 (QQE96_07770) pilP 515696..516214 (+) 519 WP_168520837.1 pilus assembly protein PilP Machinery gene
  QQE96_RS07695 (QQE96_07775) pilQ 516304..517950 (+) 1647 WP_372586270.1 type IV pilus secretin PilQ Machinery gene
  QQE96_RS07700 (QQE96_07780) aroK 518137..518658 (+) 522 WP_053309563.1 shikimate kinase AroK -
  QQE96_RS07705 (QQE96_07785) aroB 518683..519771 (+) 1089 WP_168520841.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22809.31 Da        Isoelectric Point: 4.4329

>NTDB_id=878098 QQE96_RS07685 WP_168520835.1 515116..515709(+) (pilO) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MVSFQDLDLDEITEWPLLPQLLVIVLLILILQGIGAWFYLMPKNDQLQLLKQQEPLLKTTLKIKASKAATLPYLQAQLDE
LALRYDFLLRQLPVQQELASMLAAVNQLGLESSLTFTRIDWGEKQNQDFLYRLPLNIELTGDYHDIGEFSQAIAKLPRII
NFDDADWQRVSQESSTLHFRVRAYTYQFKPEVDDGIQ

Nucleotide


Download         Length: 594 bp        

>NTDB_id=878098 QQE96_RS07685 WP_168520835.1 515116..515709(+) (pilO) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
GTGGTTAGTTTTCAAGATTTGGATTTAGATGAGATAACAGAATGGCCTTTGTTACCTCAGTTACTTGTGATTGTACTGTT
GATACTGATTCTCCAAGGCATCGGTGCTTGGTTTTATTTGATGCCTAAAAATGATCAATTACAGCTTTTAAAGCAGCAAG
AGCCGCTGCTAAAAACGACACTAAAGATAAAAGCAAGTAAAGCGGCAACTCTACCGTACTTGCAAGCTCAGCTTGATGAA
TTGGCTCTACGCTATGATTTTTTACTACGCCAGTTACCCGTGCAACAGGAGTTAGCCAGTATGTTGGCTGCGGTTAATCA
ATTAGGGTTAGAAAGCTCACTAACATTTACTCGCATTGATTGGGGGGAAAAGCAAAATCAAGATTTCTTATACCGCTTGC
CTTTGAATATCGAGTTGACTGGTGACTATCACGATATTGGTGAATTTTCACAAGCAATTGCCAAGTTGCCGCGCATCATC
AATTTTGATGATGCTGATTGGCAGAGAGTTAGTCAGGAAAGTAGCACGCTGCATTTTAGGGTACGTGCCTATACCTATCA
GTTTAAGCCTGAGGTTGACGATGGAATTCAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

78.866

98.477

0.777
  pilO Vibrio campbellii strain DS40M4

66.316

96.447

0.64