Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QQE96_RS07765 Genome accession   NZ_CP133987
Coordinates   534007..534639 (-) Length   210 a.a.
NCBI ID   WP_168520854.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529007..539639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS07750 (QQE96_07830) astA 530264..531290 (+) 1027 Protein_467 arginine N-succinyltransferase -
  QQE96_RS07755 (QQE96_07835) astD 531319..532776 (+) 1458 WP_168520850.1 succinylglutamate-semialdehyde dehydrogenase -
  QQE96_RS07760 (QQE96_07840) - 533127..533921 (+) 795 WP_168520852.1 DUF1338 domain-containing protein -
  QQE96_RS07765 (QQE96_07845) crp 534007..534639 (-) 633 WP_168520854.1 cAMP-activated global transcriptional regulator CRP Regulator
  QQE96_RS07770 (QQE96_07850) - 534882..535751 (-) 870 WP_053309541.1 phosphoribulokinase -
  QQE96_RS07775 (QQE96_07855) - 535828..536040 (-) 213 WP_053309540.1 YheU family protein -
  QQE96_RS07780 (QQE96_07860) - 536110..537087 (-) 978 WP_168520856.1 hydrolase -
  QQE96_RS07785 (QQE96_07865) - 537147..537626 (-) 480 WP_168520858.1 TIGR02444 family protein -
  QQE96_RS07790 (QQE96_07870) - 537628..539547 (-) 1920 WP_168520860.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23566.34 Da        Isoelectric Point: 7.7678

>NTDB_id=878101 QQE96_RS07765 WP_168520854.1 534007..534639(-) (crp) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERSACVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=878101 QQE96_RS07765 WP_168520854.1 534007..534639(-) (crp) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGCGAGAAAGCTGAGACGTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATTAAAG
ATGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAACGTAGCGCTTGTGTTCGTGCTAAATCTCCTTGTGAAGTGGCTGAAATTTCATTTAAGAAATTCCGTCAACTTAT
CCAGGTGAATCCAGACATCCTAATGCGCCTATCTGCTCAGATTTCACGTCGCTTACAAGTGACTAGTCAAAAAGTAGGTG
ACCTTGCGTTCCTTGACGTAACGGGTCGTATTGCTCAAACGCTACTAAACCTAGCAAAACAACCTGACGCAATGACTCAC
CCAGATGGCATGCAAATCAAGATCACCCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACGGTTGGTCGTAT
CTTGAAAATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

96.19

100

0.962
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467