Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   RCG18_RS29175 Genome accession   NZ_CP133264
Coordinates   4527724..4527843 (-) Length   39 a.a.
NCBI ID   WP_374119164.1    Uniprot ID   -
Organism   Clostridium sp. OS1-26     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4522724..4532843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG18_RS22425 (RCG18_22425) - 4523925..4524734 (-) 810 WP_308038212.1 electron transfer flavoprotein subunit beta/FixA family protein -
  RCG18_RS22430 (RCG18_22430) - 4525153..4525767 (+) 615 WP_308038214.1 hypothetical protein -
  RCG18_RS22440 (RCG18_22440) - 4526088..4527569 (-) 1482 WP_308038215.1 multicopper oxidase domain-containing protein -
  RCG18_RS29175 chpA 4527724..4527843 (-) 120 WP_374119164.1 response regulator Regulator
  RCG18_RS22445 (RCG18_22445) - 4528071..4528967 (-) 897 WP_308038216.1 prenyltransferase -
  RCG18_RS22450 (RCG18_22450) - 4529003..4529380 (-) 378 WP_308038217.1 PaaI family thioesterase -
  RCG18_RS22455 (RCG18_22455) menC 4529382..4530491 (-) 1110 WP_308038218.1 o-succinylbenzoate synthase -
  RCG18_RS22460 (RCG18_22460) menE 4530532..4531863 (-) 1332 WP_308038220.1 o-succinylbenzoate--CoA ligase -
  RCG18_RS22465 (RCG18_22465) menB 4531896..4532738 (-) 843 WP_308038221.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4244.94 Da        Isoelectric Point: 3.8125

>NTDB_id=872948 RCG18_RS29175 WP_374119164.1 4527724..4527843(-) (chpA) [Clostridium sp. OS1-26]
MSTASDGLEAIDIILNNDLDLILLDLKMPKADGMEVLRS

Nucleotide


Download         Length: 120 bp        

>NTDB_id=872948 RCG18_RS29175 WP_374119164.1 4527724..4527843(-) (chpA) [Clostridium sp. OS1-26]
ATAAGTACAGCATCTGATGGTTTAGAAGCTATTGATATAATCCTAAATAATGATTTAGATTTAATATTACTAGACCTTAA
GATGCCAAAAGCAGATGGGATGGAAGTACTAAGAAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

54.286

89.744

0.487
  covR Streptococcus salivarius strain HSISS4

51.351

94.872

0.487
  vicR Streptococcus mutans UA159

45.946

94.872

0.436
  luxQ Vibrio cholerae strain A1552

41.026

100

0.41
  luxO Vibrio cholerae strain A1552

51.613

79.487

0.41
  pilH Synechocystis sp. PCC 6803

42.105

97.436

0.41
  micA Streptococcus pneumoniae Cp1015

40.541

94.872

0.385
  pilL-C Synechocystis sp. PCC 6803

41.667

92.308

0.385
  letS Legionella pneumophila strain ERS1305867

39.474

97.436

0.385
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.118

87.179

0.385
  letA Legionella pneumophila str. Paris

42.857

89.744

0.385
  letA Legionella pneumophila strain ERS1305867

42.857

89.744

0.385