Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   O5O45_RS01580 Genome accession   NZ_CP132203
Coordinates   314872..315300 (+) Length   142 a.a.
NCBI ID   WP_305903556.1    Uniprot ID   -
Organism   Hahella sp. HNIBRBA332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309872..320300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O45_RS01560 (O5O45_01560) coaE 310021..310647 (-) 627 WP_305903552.1 dephospho-CoA kinase -
  O5O45_RS01565 (O5O45_01565) pilD 310667..311545 (-) 879 WP_305903553.1 A24 family peptidase Machinery gene
  O5O45_RS01570 (O5O45_01570) pilC 311614..312834 (-) 1221 WP_305903554.1 type II secretion system F family protein Machinery gene
  O5O45_RS01575 (O5O45_01575) pilB 312838..314553 (-) 1716 WP_305903555.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O5O45_RS01580 (O5O45_01580) pilA2 314872..315300 (+) 429 WP_305903556.1 pilin Machinery gene
  O5O45_RS01585 (O5O45_01585) - 315973..317931 (+) 1959 WP_305903557.1 tetratricopeptide repeat protein -
  O5O45_RS01590 (O5O45_01590) - 317946..318893 (+) 948 WP_305903558.1 glycosyltransferase family 2 protein -
  O5O45_RS01595 (O5O45_01595) - 318942..319772 (+) 831 WP_305903559.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14708.82 Da        Isoelectric Point: 9.0422

>NTDB_id=867631 O5O45_RS01580 WP_305903556.1 314872..315300(+) (pilA2) [Hahella sp. HNIBRBA332]
MRSMQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRTKVSEGLSLAAGAKTTVAETRLALGRFPGADNASYGLSPATSI
TGNNVRSVSIGASGAVVITYNSQDNAIAGASLVLEPTVTGGGITWDCTRGNVQDKYRPANCR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=867631 O5O45_RS01580 WP_305903556.1 314872..315300(+) (pilA2) [Hahella sp. HNIBRBA332]
ATGAGAAGCATGCAAAAAGGTTTCACCCTTATTGAATTGATGATCGTTGTTGCGATTATCGGTATTTTGGCGGCAGTGGC
GATTCCTGCTTATCAAGATTACACTGTGCGTACTAAAGTTTCTGAAGGTTTGTCACTTGCTGCGGGGGCTAAAACAACAG
TGGCCGAGACTAGGTTGGCCTTAGGGCGCTTCCCGGGCGCAGATAACGCCAGCTATGGTCTCTCTCCTGCTACTAGCATC
ACAGGAAATAATGTAAGGTCTGTGTCAATTGGTGCTAGCGGGGCGGTTGTTATTACATATAACTCTCAAGATAACGCAAT
TGCTGGCGCTTCTTTGGTTCTTGAGCCTACTGTTACTGGTGGTGGAATTACTTGGGATTGTACTCGTGGAAATGTACAGG
ATAAATACAGGCCTGCCAACTGCCGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)

Pilin (bacterial filament) (Pilin)

(36-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

53.957

97.887

0.528
  pilA Ralstonia pseudosolanacearum GMI1000

43.023

100

0.521
  pilA2 Legionella pneumophila strain ERS1305867

53.237

97.887

0.521
  pilE Neisseria gonorrhoeae MS11

43.478

100

0.493
  pilE Neisseria gonorrhoeae strain FA1090

42.5

100

0.479
  comP Acinetobacter baylyi ADP1

47.222

100

0.479
  pilA/pilA1 Eikenella corrodens VA1

38.312

100

0.415
  pilA Vibrio campbellii strain DS40M4

37.584

100

0.394
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.589

99.296

0.373