Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O5O45_RS01570 Genome accession   NZ_CP132203
Coordinates   311614..312834 (-) Length   406 a.a.
NCBI ID   WP_305903554.1    Uniprot ID   -
Organism   Hahella sp. HNIBRBA332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306614..317834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O45_RS01540 (O5O45_01540) - 307623..307979 (+) 357 WP_305903548.1 PilZ domain-containing protein -
  O5O45_RS01545 (O5O45_01545) tsaA 307969..308685 (-) 717 WP_305903549.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  O5O45_RS01550 (O5O45_01550) - 308695..309744 (-) 1050 WP_305903550.1 hypothetical protein -
  O5O45_RS01555 (O5O45_01555) yacG 309795..310031 (-) 237 WP_305903551.1 DNA gyrase inhibitor YacG -
  O5O45_RS01560 (O5O45_01560) coaE 310021..310647 (-) 627 WP_305903552.1 dephospho-CoA kinase -
  O5O45_RS01565 (O5O45_01565) pilD 310667..311545 (-) 879 WP_305903553.1 A24 family peptidase Machinery gene
  O5O45_RS01570 (O5O45_01570) pilC 311614..312834 (-) 1221 WP_305903554.1 type II secretion system F family protein Machinery gene
  O5O45_RS01575 (O5O45_01575) pilB 312838..314553 (-) 1716 WP_305903555.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O5O45_RS01580 (O5O45_01580) pilA2 314872..315300 (+) 429 WP_305903556.1 pilin Machinery gene

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43726.26 Da        Isoelectric Point: 9.0528

>NTDB_id=867629 O5O45_RS01570 WP_305903554.1 311614..312834(-) (pilC) [Hahella sp. HNIBRBA332]
MAQAASKSSTFVWEGTDRKGNKTKGEVSGSNVAVVKAQLRKQGINPIKVKKKAESILGKHTKKITPFDIAIFTRQMATMM
KAGVPLVQSFDIVADGLEHPSLRELVLDIKNEVAAGNSFAGALKKHPKYFDDLFCNLVDSGEKSGALETMLDRIATYLEK
TETLKKKVKKAMTYPIAVLVVAVIVTGILLIKVVPQFQELFQGFGADLPAFTQLVINMSEALQSSWYIVLGIMIAAVVAF
TEAKRRSPAFADALDKYILKLPIMGDILHKSAVARFARVLATTFAAGVPLVDALESVAGATGNSVFRKAVNKIRDEVSSG
TQLQYSMKGTGVFPAMAVQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPLIMAVLGVLVGGLIIAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=867629 O5O45_RS01570 WP_305903554.1 311614..312834(-) (pilC) [Hahella sp. HNIBRBA332]
ATGGCCCAGGCAGCAAGTAAAAGTTCTACCTTCGTTTGGGAAGGCACCGACCGAAAAGGAAATAAAACAAAAGGGGAAGT
AAGTGGTTCCAATGTCGCAGTAGTTAAAGCTCAGCTACGAAAACAAGGCATAAACCCAATAAAAGTAAAGAAAAAAGCTG
AGAGTATATTAGGGAAGCATACCAAAAAGATCACGCCCTTCGACATTGCCATTTTTACTAGGCAGATGGCCACAATGATG
AAAGCCGGCGTTCCACTGGTTCAATCCTTTGATATTGTCGCAGACGGGTTAGAGCACCCTTCTTTAAGAGAGCTAGTACT
AGACATCAAAAACGAAGTGGCAGCTGGCAATAGCTTCGCAGGGGCTTTAAAAAAACATCCCAAATATTTTGATGATCTAT
TCTGCAACCTAGTTGACTCAGGCGAGAAATCTGGCGCTCTAGAAACAATGCTGGATCGAATTGCAACTTACCTGGAGAAA
ACAGAAACCCTGAAGAAAAAAGTAAAGAAAGCTATGACTTATCCGATCGCGGTGCTAGTCGTGGCAGTTATCGTTACCGG
TATTCTTCTAATAAAAGTGGTCCCTCAGTTTCAAGAACTCTTTCAAGGCTTCGGCGCAGACCTTCCAGCCTTTACTCAGT
TAGTTATTAATATGTCAGAGGCGCTGCAGAGCTCATGGTATATCGTCCTTGGCATAATGATAGCTGCTGTGGTCGCCTTT
ACAGAAGCAAAGAGAAGATCTCCCGCATTTGCAGACGCGCTAGACAAATACATTCTAAAGCTTCCTATTATGGGGGATAT
CTTACACAAATCCGCTGTCGCCAGATTTGCAAGGGTTTTAGCTACTACGTTTGCAGCCGGCGTTCCATTAGTTGATGCCT
TAGAGTCAGTTGCAGGCGCAACCGGTAACTCTGTATTCAGAAAGGCAGTAAACAAAATCCGTGACGAGGTATCTTCCGGC
ACCCAGCTGCAATACAGTATGAAGGGCACTGGAGTCTTCCCTGCCATGGCGGTTCAGCTAACCTCAATAGGGGAAGAATC
TGGCGCGTTAGATGACATGCTGGAAAAAGTTGCTGACCACTATGAAGCAGAGGTCGACGATGCAGTCGACAACCTTACAG
CACTGATGGAGCCGTTGATCATGGCTGTGCTTGGCGTATTGGTCGGTGGACTCATTATCGCCATGTACCTCCCCATTTTC
CAATTGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.704

100

0.697
  pilC Acinetobacter baumannii D1279779

62.814

98.03

0.616
  pilC Acinetobacter baylyi ADP1

61.461

97.783

0.601
  pilC Legionella pneumophila strain ERS1305867

56.171

97.783

0.549
  pilG Neisseria gonorrhoeae MS11

45.161

99.261

0.448
  pilG Neisseria meningitidis 44/76-A

45.161

99.261

0.448
  pilC Vibrio campbellii strain DS40M4

39.558

100

0.397
  pilC Vibrio cholerae strain A1552

40.05

97.783

0.392
  pilC Thermus thermophilus HB27

36.935

98.03

0.362