Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O5O45_RS01565 Genome accession   NZ_CP132203
Coordinates   310667..311545 (-) Length   292 a.a.
NCBI ID   WP_305903553.1    Uniprot ID   -
Organism   Hahella sp. HNIBRBA332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305667..316545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O45_RS01540 (O5O45_01540) - 307623..307979 (+) 357 WP_305903548.1 PilZ domain-containing protein -
  O5O45_RS01545 (O5O45_01545) tsaA 307969..308685 (-) 717 WP_305903549.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  O5O45_RS01550 (O5O45_01550) - 308695..309744 (-) 1050 WP_305903550.1 hypothetical protein -
  O5O45_RS01555 (O5O45_01555) yacG 309795..310031 (-) 237 WP_305903551.1 DNA gyrase inhibitor YacG -
  O5O45_RS01560 (O5O45_01560) coaE 310021..310647 (-) 627 WP_305903552.1 dephospho-CoA kinase -
  O5O45_RS01565 (O5O45_01565) pilD 310667..311545 (-) 879 WP_305903553.1 A24 family peptidase Machinery gene
  O5O45_RS01570 (O5O45_01570) pilC 311614..312834 (-) 1221 WP_305903554.1 type II secretion system F family protein Machinery gene
  O5O45_RS01575 (O5O45_01575) pilB 312838..314553 (-) 1716 WP_305903555.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O5O45_RS01580 (O5O45_01580) pilA2 314872..315300 (+) 429 WP_305903556.1 pilin Machinery gene

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31886.16 Da        Isoelectric Point: 7.1059

>NTDB_id=867628 O5O45_RS01565 WP_305903553.1 310667..311545(-) (pilD) [Hahella sp. HNIBRBA332]
MLDIFNQFNHNPALLYTTVIVFGLIVGSFLNVVILRKPKMLEQEWRAQCAEIPGCDCPKTDEPLITLSKPDSTCPKCGHK
IRAWENIPVISYLFLGGKCSSCKTGISIRYPLVEIATALLAVIAVCYFKMSWAGLAAIGLSWTLLTLSLIDFDTQLLPDD
LTLPLLWAGLLINIQGIFAPLSEAVIGAVIGYLALWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWKMLPLIILLSSL
VGAVIGLAMIITLGRDKNIPIPFGPYLAIAGWIAMIWGNDIVSAYLGMYPAP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=867628 O5O45_RS01565 WP_305903553.1 310667..311545(-) (pilD) [Hahella sp. HNIBRBA332]
ATGTTAGATATCTTTAATCAGTTCAATCATAACCCTGCACTGCTTTATACCACGGTCATTGTTTTCGGCTTGATTGTCGG
CAGCTTTCTGAATGTCGTTATTCTGCGGAAGCCGAAAATGCTGGAGCAGGAGTGGCGCGCTCAGTGCGCTGAAATTCCAG
GCTGCGACTGCCCTAAGACAGATGAGCCTCTTATCACGCTTTCCAAACCCGACTCAACTTGCCCTAAGTGTGGACATAAA
ATCAGAGCCTGGGAGAATATTCCGGTAATCAGTTATTTGTTTCTTGGCGGCAAGTGCTCCTCGTGCAAAACGGGTATTTC
TATTCGCTATCCCCTAGTGGAAATCGCTACTGCTTTATTAGCGGTCATTGCCGTCTGCTACTTCAAGATGAGTTGGGCGG
GACTGGCGGCCATTGGCTTAAGCTGGACATTGCTTACGTTGTCATTGATAGACTTCGATACCCAGCTGCTTCCTGATGAC
CTGACGCTCCCACTGCTTTGGGCGGGATTGTTAATCAATATCCAAGGTATCTTCGCCCCCCTATCAGAAGCTGTGATTGG
CGCAGTGATCGGCTATTTGGCTTTGTGGTCGGTTTACCATTTATTCCGCCTTTTGACCGGCAAGGAAGGTATGGGGTACG
GCGACTTCAAACTGCTCGCCGCTCTGGGAGCCTGGCTGGGCTGGAAAATGCTCCCGCTCATTATTCTGCTTTCGTCACTG
GTTGGGGCCGTTATTGGCCTGGCGATGATCATTACCTTGGGCAGAGATAAAAACATCCCTATCCCCTTTGGCCCCTATCT
GGCGATTGCCGGCTGGATCGCCATGATCTGGGGAAATGACATCGTATCCGCCTATTTGGGGATGTATCCTGCGCCTTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(140-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.381

96.233

0.514
  pilD Acinetobacter baumannii D1279779

51.916

98.288

0.51
  pilD Acinetobacter nosocomialis M2

51.568

98.288

0.507
  pilD Vibrio campbellii strain DS40M4

52.482

96.575

0.507
  pilD Neisseria gonorrhoeae MS11

51.136

90.411

0.462