Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QY488_RS23470 Genome accession   NZ_CP129517
Coordinates   5069071..5069520 (-) Length   149 a.a.
NCBI ID   WP_301461384.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PAO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5064071..5074520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY488_RS23450 (QY488_23450) ampD 5064763..5065329 (-) 567 WP_003112844.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QY488_RS23455 (QY488_23455) - 5065480..5067735 (-) 2256 WP_003112843.1 DUF1631 domain-containing protein -
  QY488_RS23460 (QY488_23460) nadC 5068021..5068869 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QY488_RS23470 (QY488_23470) pilA 5069071..5069520 (-) 450 WP_301461384.1 type 4a pilus biogenesis protein PilA Machinery gene
  QY488_RS23475 (QY488_23475) pilB 5069752..5071452 (+) 1701 WP_003112841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QY488_RS23480 (QY488_23480) pilC 5071456..5072676 (+) 1221 WP_003112840.1 type 4a pilus biogenesis protein PilC Machinery gene
  QY488_RS23485 (QY488_23485) pilD 5072680..5073552 (+) 873 WP_003112839.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  QY488_RS23490 (QY488_23490) coaE 5073549..5074160 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  QY488_RS23495 (QY488_23495) yacG 5074157..5074357 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15580.89 Da        Isoelectric Point: 7.7821

>NTDB_id=853714 QY488_RS23470 WP_301461384.1 5069071..5069520(-) (pilA) [Pseudomonas aeruginosa PAO1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGRKIKIGTTASTATETYV
GVEPDANKLGVIAVAIEDSGAGDITFTFQTGTSSPKNATKVITLNRTADGVWACKSTQDPMFTPKGCDN

Nucleotide


Download         Length: 450 bp        

>NTDB_id=853714 QY488_RS23470 WP_301461384.1 5069071..5069520(-) (pilA) [Pseudomonas aeruginosa PAO1]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCAATTGCCAT
TCCCCAGTATCAGAACTATGTTGCGCGTTCGGAAGGTGCTTCGGCGCTGGCGACGATCAACCCGCTGAAGACCACTGTTG
AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGAAAAATTAAAATTGGTACTACTGCTTCTACTGCGACCGAAACATATGTC
GGCGTCGAGCCGGATGCCAACAAGTTGGGTGTAATTGCTGTAGCAATCGAAGATAGTGGTGCGGGTGATATTACCTTTAC
CTTCCAGACTGGTACCTCTAGTCCCAAGAATGCTACTAAAGTTATCACTCTGAACCGTACTGCGGATGGGGTCTGGGCTT
GTAAATCTACCCAGGATCCGATGTTCACTCCGAAAGGTTGTGATAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

67.785

100

0.678
  pilA Acinetobacter baumannii strain A118

48

100

0.483
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

48.322

100

0.483
  pilA Vibrio cholerae strain A1552

48.322

100

0.483
  pilA Vibrio cholerae C6706

48.322

100

0.483
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.98

100

0.47
  pilA Vibrio parahaemolyticus RIMD 2210633

44.898

98.658

0.443
  comP Acinetobacter baylyi ADP1

41.83

100

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.357

95.973

0.416
  pilA2 Legionella pneumophila str. Paris

38.776

98.658

0.383
  pilA2 Legionella pneumophila strain ERS1305867

38.095

98.658

0.376