Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LC048_RS24405 Genome accession   NZ_CP129019
Coordinates   4686909..4687328 (+) Length   139 a.a.
NCBI ID   WP_226602886.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4681909..4692328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS24375 (LC048_24375) - 4682853..4683671 (+) 819 WP_226602894.1 flagellar hook-basal body protein -
  LC048_RS24380 (LC048_24380) - 4683730..4684578 (+) 849 WP_226602892.1 flagellar hook-basal body protein -
  LC048_RS24385 (LC048_24385) - 4684598..4684858 (+) 261 WP_226602891.1 DNA-directed RNA polymerase subunit beta -
  LC048_RS24390 (LC048_24390) fabZ 4684947..4685369 (+) 423 WP_023613628.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LC048_RS24395 (LC048_24395) - 4685806..4686087 (+) 282 WP_226602889.1 hypothetical protein -
  LC048_RS24400 (LC048_24400) - 4686214..4686648 (-) 435 WP_226602888.1 YwpF-like family protein -
  LC048_RS24405 (LC048_24405) ssbB 4686909..4687328 (+) 420 WP_226602886.1 single-stranded DNA-binding protein Machinery gene
  LC048_RS24410 (LC048_24410) - 4687321..4687527 (+) 207 WP_226602884.1 hypothetical protein -
  LC048_RS24415 (LC048_24415) - 4688477..4691302 (-) 2826 WP_306049043.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15600.49 Da        Isoelectric Point: 8.4846

>NTDB_id=850614 LC048_RS24405 WP_226602886.1 4686909..4687328(+) (ssbB) [Mesobacillus subterraneus strain KcN21-5]
MINQVTLVGRLTRDPELRYTPDGKAVSNITLAVNRHYKNADGEIEADFVHCIIWGKNAENTSNYCKKGSVLGVTGRIQTR
NYDNHEGKRVYVTEVVAEGVRFLSTKPAGTRENQQTTQPPRHPETVPQAPPQREELPFA

Nucleotide


Download         Length: 420 bp        

>NTDB_id=850614 LC048_RS24405 WP_226602886.1 4686909..4687328(+) (ssbB) [Mesobacillus subterraneus strain KcN21-5]
GTGATCAATCAAGTAACCCTTGTAGGCAGACTGACGAGAGACCCTGAGCTCAGGTATACACCTGATGGAAAAGCGGTATC
GAATATAACGCTTGCGGTGAACCGTCATTATAAAAATGCTGACGGTGAAATCGAGGCTGATTTTGTCCACTGCATCATCT
GGGGCAAAAATGCAGAGAATACGTCCAACTATTGTAAAAAAGGCTCTGTTCTCGGAGTCACCGGACGCATCCAGACACGA
AACTATGATAACCATGAGGGTAAGCGGGTCTACGTGACTGAAGTCGTGGCTGAGGGTGTCAGGTTTTTAAGTACAAAACC
GGCAGGCACAAGGGAAAATCAGCAGACAACGCAACCGCCTCGGCATCCGGAAACTGTACCCCAGGCGCCGCCGCAAAGAG
AGGAGCTTCCTTTTGCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.355

76.978

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

47.26

100

0.496
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

76.259

0.475
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.727

100

0.417
  ssb Neisseria gonorrhoeae MS11

33.54

100

0.388
  ssbB/cilA Streptococcus mitis NCTC 12261

39.13

99.281

0.388
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.13

99.281

0.388
  ssb Neisseria meningitidis MC58

33.54

100

0.388
  ssbB/cilA Streptococcus pneumoniae R6

38.406

99.281

0.381
  ssbB/cilA Streptococcus mitis SK321

38.406

99.281

0.381
  ssbB/cilA Streptococcus pneumoniae Rx1

38.406

99.281

0.381
  ssbB/cilA Streptococcus pneumoniae D39

38.406

99.281

0.381
  ssbA Streptococcus mutans UA159

36.957

99.281

0.367