Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   L6410_RS10215 Genome accession   NZ_AP024276
Coordinates   2036123..2037073 (-) Length   316 a.a.
NCBI ID   WP_237395458.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031123..2042073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS10175 (SUT286_19910) - 2031126..2032313 (-) 1188 WP_237395449.1 acetate kinase -
  L6410_RS10180 (SUT286_19920) comYH 2032363..2033316 (-) 954 WP_172071572.1 class I SAM-dependent methyltransferase Machinery gene
  L6410_RS10185 (SUT286_19930) comGG 2033336..2033836 (-) 501 WP_237395452.1 competence type IV pilus minor pilin ComGG -
  L6410_RS10190 (SUT286_19940) comYF 2033814..2034248 (-) 435 WP_237395454.1 competence type IV pilus minor pilin ComGF Machinery gene
  L6410_RS10195 (SUT286_19950) comGE 2034235..2034528 (-) 294 WP_237395456.1 competence type IV pilus minor pilin ComGE -
  L6410_RS10200 (SUT286_19960) comGD 2034500..2034904 (-) 405 WP_172040730.1 competence type IV pilus minor pilin ComGD -
  L6410_RS10205 (SUT286_19970) comYC 2034888..2035172 (-) 285 WP_172055438.1 competence type IV pilus major pilin ComGC Machinery gene
  L6410_RS10210 (SUT286_19980) comYB 2035174..2036202 (-) 1029 WP_261311091.1 competence type IV pilus assembly protein ComGB Machinery gene
  L6410_RS10215 (SUT286_19990) comYA 2036123..2037073 (-) 951 WP_237395458.1 competence type IV pilus ATPase ComGA Machinery gene
  L6410_RS10220 (SUT286_20000) - 2037161..2038111 (+) 951 WP_237395459.1 S66 family peptidase -
  L6410_RS10225 (SUT286_20010) - 2038139..2038513 (-) 375 WP_024392660.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35472.37 Da        Isoelectric Point: 5.4730

>NTDB_id=84501 L6410_RS10215 WP_237395458.1 2036123..2037073(-) (comYA) [Streptococcus parasuis strain SUT-286]
MIQEKARKMIEEAVAERVSDIYLIPRGENYQVYHRVMDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCDYN
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLNFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIDCLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=84501 L6410_RS10215 WP_237395458.1 2036123..2037073(-) (comYA) [Streptococcus parasuis strain SUT-286]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGCCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTGACCGAAGATGAGGTGATGGCCA
TTATTAGTCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGACTACAAT
TATGGCTCAGGGGAGATTTCACTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAATTTTTGGTTTGGAGCATTGGAGAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCAGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATTGAAGATCCAGTGGAAATCAAACAGGAAGATATGCTCCAACTCCAGCTTAACGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CGCGAGCAGTAATACGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCCCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTAAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAACGAGCAAATTGATTGCC
TTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.065

98.101

0.668
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.484

98.101

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

54.89

100

0.551
  comGA Latilactobacillus sakei subsp. sakei 23K

41.877

87.658

0.367

Multiple sequence alignment