Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   L6410_RS10210 Genome accession   NZ_AP024276
Coordinates   2035174..2036202 (-) Length   342 a.a.
NCBI ID   WP_261311091.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030174..2041202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS10170 (SUT286_19900) - 2030320..2030871 (-) 552 WP_237395448.1 folate family ECF transporter S component -
  L6410_RS10175 (SUT286_19910) - 2031126..2032313 (-) 1188 WP_237395449.1 acetate kinase -
  L6410_RS10180 (SUT286_19920) comYH 2032363..2033316 (-) 954 WP_172071572.1 class I SAM-dependent methyltransferase Machinery gene
  L6410_RS10185 (SUT286_19930) comGG 2033336..2033836 (-) 501 WP_237395452.1 competence type IV pilus minor pilin ComGG -
  L6410_RS10190 (SUT286_19940) comYF 2033814..2034248 (-) 435 WP_237395454.1 competence type IV pilus minor pilin ComGF Machinery gene
  L6410_RS10195 (SUT286_19950) comGE 2034235..2034528 (-) 294 WP_237395456.1 competence type IV pilus minor pilin ComGE -
  L6410_RS10200 (SUT286_19960) comGD 2034500..2034904 (-) 405 WP_172040730.1 competence type IV pilus minor pilin ComGD -
  L6410_RS10205 (SUT286_19970) comYC 2034888..2035172 (-) 285 WP_172055438.1 competence type IV pilus major pilin ComGC Machinery gene
  L6410_RS10210 (SUT286_19980) comYB 2035174..2036202 (-) 1029 WP_261311091.1 competence type IV pilus assembly protein ComGB Machinery gene
  L6410_RS10215 (SUT286_19990) comYA 2036123..2037073 (-) 951 WP_237395458.1 competence type IV pilus ATPase ComGA Machinery gene
  L6410_RS10220 (SUT286_20000) - 2037161..2038111 (+) 951 WP_237395459.1 S66 family peptidase -
  L6410_RS10225 (SUT286_20010) - 2038139..2038513 (-) 375 WP_024392660.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 38900.83 Da        Isoelectric Point: 9.0810

>NTDB_id=84500 L6410_RS10210 WP_261311091.1 2035174..2036202(-) (comYB) [Streptococcus parasuis strain SUT-286]
MIAFLQQDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLLGDL
RFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATILIQ
HLPTIFLSFCGLFFLAVLGGLIWYRRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQEQKS
QLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEDFFTRVNRAMQLIQPLVFLF
VALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=84500 L6410_RS10210 WP_261311091.1 2035174..2036202(-) (comYB) [Streptococcus parasuis strain SUT-286]
TTGATTGCCTTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA
GGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGGGAAATTGTCGATTTTCTCAAACGGAGTCAAC
TCTTGGCTGATCAATACACGCAAGTTTTGTCCGATGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTGGGAGATTTA
CGCTTTTCGGATGCGGTTGTCACCCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAGTCATATTCA
ATCTTATCTTGAAAATGTTAGCAAGGTGCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGCTTGCCTTTT
TATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATATTGATTCAA
CACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTATCGCAGAAC
AAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGACCGCCTATT
ACGCGAGGGAATGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAACAAAAATCA
CAGCTTTTTCGTGAGATTGGTGAAGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATATCCAAACGTA
TGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGTTATCTGTGT
ATGCAACAGAGTGTTGGGAGGATTTTTTTACTCGCGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTTTTTCTCTTT
GTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCAATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(30-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.819

100

0.608
  comYB Streptococcus mutans UA140

60.117

99.708

0.599
  comYB Streptococcus mutans UA159

60.117

99.708

0.599
  comGB/cglB Streptococcus mitis SK321

60

97.953

0.588
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.953

0.585
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.953

0.579
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.953

0.579
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.953

0.579
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.953

0.579
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

98.538

0.506

Multiple sequence alignment