Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | L6410_RS10180 | Genome accession | NZ_AP024276 |
| Coordinates | 2032363..2033316 (-) | Length | 317 a.a. |
| NCBI ID | WP_172071572.1 | Uniprot ID | - |
| Organism | Streptococcus parasuis strain SUT-286 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2027363..2038316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6410_RS10155 (SUT286_19870) | - | 2027405..2027689 (-) | 285 | WP_002936537.1 | DUF4651 domain-containing protein | - |
| L6410_RS10160 (SUT286_19880) | pepA | 2027902..2028963 (+) | 1062 | WP_024393516.1 | glutamyl aminopeptidase | - |
| L6410_RS10165 (SUT286_19890) | - | 2029009..2030265 (-) | 1257 | WP_237396779.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| L6410_RS10170 (SUT286_19900) | - | 2030320..2030871 (-) | 552 | WP_237395448.1 | folate family ECF transporter S component | - |
| L6410_RS10175 (SUT286_19910) | - | 2031126..2032313 (-) | 1188 | WP_237395449.1 | acetate kinase | - |
| L6410_RS10180 (SUT286_19920) | comYH | 2032363..2033316 (-) | 954 | WP_172071572.1 | class I SAM-dependent methyltransferase | Machinery gene |
| L6410_RS10185 (SUT286_19930) | comGG | 2033336..2033836 (-) | 501 | WP_237395452.1 | competence type IV pilus minor pilin ComGG | - |
| L6410_RS10190 (SUT286_19940) | comYF | 2033814..2034248 (-) | 435 | WP_237395454.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| L6410_RS10195 (SUT286_19950) | comGE | 2034235..2034528 (-) | 294 | WP_237395456.1 | competence type IV pilus minor pilin ComGE | - |
| L6410_RS10200 (SUT286_19960) | comGD | 2034500..2034904 (-) | 405 | WP_172040730.1 | competence type IV pilus minor pilin ComGD | - |
| L6410_RS10205 (SUT286_19970) | comYC | 2034888..2035172 (-) | 285 | WP_172055438.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L6410_RS10210 (SUT286_19980) | comYB | 2035174..2036202 (-) | 1029 | WP_261311091.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| L6410_RS10215 (SUT286_19990) | comYA | 2036123..2037073 (-) | 951 | WP_237395458.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L6410_RS10220 (SUT286_20000) | - | 2037161..2038111 (+) | 951 | WP_237395459.1 | S66 family peptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35653.86 Da Isoelectric Point: 4.6418
>NTDB_id=84497 L6410_RS10180 WP_172071572.1 2032363..2033316(-) (comYH) [Streptococcus parasuis strain SUT-286]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETELVLNNNKVLRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SNLLKGWLQEQANVVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETELVLNNNKVLRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SNLLKGWLQEQANVVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=84497 L6410_RS10180 WP_172071572.1 2032363..2033316(-) (comYH) [Streptococcus parasuis strain SUT-286]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTACTTTTAGAAAATGTACAGACGATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGATCAACATGAAACTGAACTTGTTCTCAACAACAATA
AAGTCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTGCTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGATTCTATCGGATTTATCTTATCTTTCCTTGTGGACCAGTTGGTCTC
TACTCCAAGAGTGACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCTAGCCAAAAGG
AATTAGACTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCAGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTAGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACGAGTCCGCAA
AGCAATTTATTAAAAGGCTGGTTACAAGAACAAGCCAATGTTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTACTTTTAGAAAATGTACAGACGATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGATCAACATGAAACTGAACTTGTTCTCAACAACAATA
AAGTCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTGCTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGATTCTATCGGATTTATCTTATCTTTCCTTGTGGACCAGTTGGTCTC
TACTCCAAGAGTGACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCTAGCCAAAAGG
AATTAGACTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCAGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTAGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACGAGTCCGCAA
AGCAATTTATTAAAAGGCTGGTTACAAGAACAAGCCAATGTTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.494 |
99.685 |
0.593 |
| comYH | Streptococcus mutans UA159 |
59.177 |
99.685 |
0.59 |