Detailed information NTG0084498

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: L6410_RS10190
• Genome accession: NZ_AP024276
• Coordinates: 2033814..2034248 (-)
• Length: 144 a.a.
• NCBI ID: WP_237395454.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SUT-286
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2028814..2039248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6410_RS10165 (SUT286_19890)	-	2029009..2030265 (-)	1257	WP_237396779.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
L6410_RS10170 (SUT286_19900)	-	2030320..2030871 (-)	552	WP_237395448.1	folate family ECF transporter S component	-
L6410_RS10175 (SUT286_19910)	-	2031126..2032313 (-)	1188	WP_237395449.1	acetate kinase	-
L6410_RS10180 (SUT286_19920)	comYH	2032363..2033316 (-)	954	WP_172071572.1	class I SAM-dependent methyltransferase	Machinery gene
L6410_RS10185 (SUT286_19930)	comGG	2033336..2033836 (-)	501	WP_237395452.1	competence type IV pilus minor pilin ComGG	-
L6410_RS10190 (SUT286_19940)	comYF	2033814..2034248 (-)	435	WP_237395454.1	competence type IV pilus minor pilin ComGF	Machinery gene
L6410_RS10195 (SUT286_19950)	comGE	2034235..2034528 (-)	294	WP_237395456.1	competence type IV pilus minor pilin ComGE	-
L6410_RS10200 (SUT286_19960)	comGD	2034500..2034904 (-)	405	WP_172040730.1	competence type IV pilus minor pilin ComGD	-
L6410_RS10205 (SUT286_19970)	comYC	2034888..2035172 (-)	285	WP_172055438.1	competence type IV pilus major pilin ComGC	Machinery gene
L6410_RS10210 (SUT286_19980)	comYB	2035174..2036202 (-)	1029	WP_261311091.1	competence type IV pilus assembly protein ComGB	Machinery gene
L6410_RS10215 (SUT286_19990)	comYA	2036123..2037073 (-)	951	WP_237395458.1	competence type IV pilus ATPase ComGA	Machinery gene
L6410_RS10220 (SUT286_20000)	-	2037161..2038111 (+)	951	WP_237395459.1	S66 family peptidase	-
L6410_RS10225 (SUT286_20010)	-	2038139..2038513 (-)	375	WP_024392660.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16510.97 Da
• Isoelectric Point: 7.1334

>NTDB_id=84498 L6410_RS10190 WP_237395454.1 2033814..2034248(-) (comYF) [Streptococcus parasuis strain SUT-286]
MRKTKLAAFTLLECLIALLIISGSLLVIEGLSKLIAHEVRYQERHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSMADDFRKTNANGQGYQPMLYKVYSATYVQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide

• Length: 435 bp

>NTDB_id=84498 L6410_RS10190 WP_237395454.1 2033814..2034248(-) (comYF) [Streptococcus parasuis strain SUT-286]
TTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTGCTTTACTTATTATTTCTGGCAGCTTGCTAGT
GATTGAAGGTTTATCAAAATTAATAGCGCATGAGGTTCGCTATCAAGAGCGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGCAAGTCTATGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTACGTCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	54.167	100	0.542
comYF	Streptococcus mutans UA140	54.167	100	0.542
comGF	Lactococcus lactis subsp. cremoris KW2	47.518	97.917	0.465
comGF/cglF	Streptococcus mitis NCTC 12261	47.143	97.222	0.458
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.833	0.437
comGF/cglF	Streptococcus mitis SK321	44.286	97.222	0.431