Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QQA13_RS12160 Genome accession   NZ_CP127409
Coordinates   2616329..2616769 (+) Length   146 a.a.
NCBI ID   WP_108470805.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain C33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611329..2621769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA13_RS12140 - 2611925..2612779 (+) 855 WP_234411267.1 5'-3' exonuclease H3TH domain-containing protein -
  QQA13_RS12145 - 2613010..2615142 (-) 2133 WP_108470802.1 S9 family peptidase -
  QQA13_RS12150 - 2615364..2615576 (+) 213 WP_325051446.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QQA13_RS12155 - 2615646..2615873 (+) 228 Protein_2384 HigA family addiction module antitoxin -
  QQA13_RS12160 pilE 2616329..2616769 (+) 441 WP_108470805.1 pilin Machinery gene
  QQA13_RS12165 - 2616854..2618863 (+) 2010 WP_234411268.1 tetratricopeptide repeat protein -
  QQA13_RS12170 - 2618899..2620872 (+) 1974 WP_108470967.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15270.70 Da        Isoelectric Point: 9.5198

>NTDB_id=844168 QQA13_RS12160 WP_108470805.1 2616329..2616769(+) (pilE) [Rhodanobacter thiooxydans strain C33]
MKSMQKGFTLIELMIVVAIIAILAAIAIPAYQDYLIRTQASEGVTMMDGAKVGVTEFFANTGRLPTNNTSAGLSSATSIT
GKYVASVTVGNTGIITSKFNTTQANKAIQGTEINLSPATLNGVVVWACHPGTTAPALKYLPTTCRN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=844168 QQA13_RS12160 WP_108470805.1 2616329..2616769(+) (pilE) [Rhodanobacter thiooxydans strain C33]
ATGAAGAGCATGCAAAAGGGCTTTACCCTGATCGAACTGATGATCGTGGTTGCGATCATCGCGATCCTCGCCGCGATCGC
CATCCCGGCCTATCAGGACTACCTGATCCGCACACAGGCGAGCGAAGGCGTCACGATGATGGACGGCGCCAAAGTTGGCG
TCACCGAGTTCTTTGCCAACACCGGCAGGCTTCCGACCAACAACACCTCAGCAGGTCTTTCGTCCGCTACCTCCATCACC
GGCAAGTATGTGGCCTCCGTTACCGTTGGTAATACTGGCATCATCACTTCCAAGTTCAACACGACCCAGGCCAACAAGGC
TATCCAGGGTACGGAGATCAACCTCTCGCCAGCGACGCTCAACGGTGTCGTGGTTTGGGCCTGTCATCCGGGTACTACGG
CGCCGGCACTCAAGTACCTGCCAACGACCTGCCGCAACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(37-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

45.963

100

0.507
  pilE Neisseria gonorrhoeae strain FA1090

45.625

100

0.5
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.126

100

0.473
  pilA2 Legionella pneumophila str. Paris

46.479

97.26

0.452
  pilA2 Legionella pneumophila strain ERS1305867

45.775

97.26

0.445
  pilA Ralstonia pseudosolanacearum GMI1000

38.922

100

0.445
  comP Acinetobacter baylyi ADP1

43.333

100

0.445
  pilA/pilA1 Eikenella corrodens VA1

41.026

100

0.438
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.437

97.26

0.384
  pilA Vibrio campbellii strain DS40M4

36

100

0.37
  pilA Haemophilus influenzae 86-028NP

37.5

98.63

0.37
  pilA Haemophilus influenzae Rd KW20

36.806

98.63

0.363