Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LLC_RS09335 Genome accession   NZ_AP024222
Coordinates   1847630..1847980 (+) Length   116 a.a.
NCBI ID   WP_050574187.1    Uniprot ID   A0A1V0PEI8
Organism   Lactococcus cremoris strain EPSC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1842630..1852980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC_RS09325 (LLC_19220) comGA 1845679..1846660 (+) 982 Protein_1841 competence type IV pilus ATPase ComGA -
  LLC_RS09330 (LLC_19230) comGB 1846560..1847585 (+) 1026 WP_050574185.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLC_RS09335 (LLC_19240) comGC 1847630..1847980 (+) 351 WP_050574187.1 competence type IV pilus major pilin ComGC Machinery gene
  LLC_RS14270 (LLC_19250) comGD 1848182..1848370 (+) 189 WP_014573336.1 hypothetical protein Machinery gene
  LLC_RS09345 (LLC_19260) comGE 1848342..1848638 (+) 297 WP_021164977.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLC_RS09350 (LLC_19270) comGF 1848622..1849047 (+) 426 WP_014735174.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLC_RS09355 (LLC_19290) comGG 1849143..1849370 (+) 228 WP_228764408.1 competence protein ComGG Machinery gene
  LLC_RS09360 (LLC_19300) - 1849450..1849887 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLC_RS09365 (LLC_19310) - 1849884..1850726 (+) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLC_RS09370 (LLC_19320) - 1850905..1851642 (+) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLC_RS09375 (LLC_19330) - 1851635..1852444 (+) 810 WP_011677177.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13315.52 Da        Isoelectric Point: 7.2003

>NTDB_id=84142 LLC_RS09335 WP_050574187.1 1847630..1847980(+) (comGC) [Lactococcus cremoris strain EPSC]
MIKALSLIKIHGRKLWQKKQKAFTLIEMLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDNDK
PNLSELLSAGMITQKQVTAYDDYYDQNKNEQRNFDD

Nucleotide


Download         Length: 351 bp        

>NTDB_id=84142 LLC_RS09335 WP_050574187.1 1847630..1847980(+) (comGC) [Lactococcus cremoris strain EPSC]
ATGATCAAAGCTTTGTCATTAATTAAAATTCACGGAAGAAAGCTTTGGCAAAAAAAGCAAAAAGCATTTACCTTGATTGA
GATGTTAATTGTGTTGGCAATTATCAGTATTTTAATTTTGCTTTTTGTGCCAAATTTGATAAAAGAAAAAGCACAAGTTC
AAAAAACTGGTGAAGCAGCAGTAGTTAAAGTAGTTGAAAGTCAGGCACAACTTTATGAGTTGGATCATGATAATGATAAG
CCAAACCTATCAGAACTTTTAAGTGCGGGGATGATTACGCAAAAGCAAGTCACGGCCTATGATGATTACTATGACCAGAA
TAAAAATGAACAGCGCAATTTCGATGATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(18-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

97.414

100

0.974
  comYC Streptococcus gordonii str. Challis substr. CH1

58.586

85.345

0.5
  comGC/cglC Streptococcus mitis SK321

55.882

87.931

0.491
  comGC/cglC Streptococcus pneumoniae R6

53.922

87.931

0.474
  comGC/cglC Streptococcus pneumoniae TIGR4

53.922

87.931

0.474
  comGC/cglC Streptococcus pneumoniae Rx1

53.922

87.931

0.474
  comGC/cglC Streptococcus pneumoniae D39

53.922

87.931

0.474
  comYC Streptococcus mutans UA140

59.14

80.172

0.474
  comYC Streptococcus mutans UA159

59.14

80.172

0.474
  comGC/cglC Streptococcus mitis NCTC 12261

55.67

83.621

0.466
  comYC Streptococcus suis isolate S10

56.818

75.862

0.431

Multiple sequence alignment