Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLC_RS14270 Genome accession   NZ_AP024222
Coordinates   1848182..1848370 (+) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain EPSC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1849253..1861784 1848182..1848370 flank 883


Gene organization within MGE regions


Location: 1848182..1861784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC_RS14270 (LLC_19250) comGD 1848182..1848370 (+) 189 WP_014573336.1 hypothetical protein Machinery gene
  LLC_RS09345 (LLC_19260) comGE 1848342..1848638 (+) 297 WP_021164977.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLC_RS09350 (LLC_19270) comGF 1848622..1849047 (+) 426 WP_014735174.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLC_RS09355 (LLC_19290) comGG 1849143..1849370 (+) 228 WP_228764408.1 competence protein ComGG Machinery gene
  LLC_RS09360 (LLC_19300) - 1849450..1849887 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLC_RS09365 (LLC_19310) - 1849884..1850726 (+) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLC_RS09370 (LLC_19320) - 1850905..1851642 (+) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLC_RS09375 (LLC_19330) - 1851635..1852444 (+) 810 WP_011677177.1 metal ABC transporter permease -
  LLC_RS09380 - 1852517..1853910 (+) 1394 WP_126354656.1 IS3 family transposase -
  LLC_RS09385 (LLC_19360) - 1853974..1854846 (-) 873 WP_014573331.1 RluA family pseudouridine synthase -
  LLC_RS09390 - 1855040..1855417 (+) 378 Protein_1854 pyridoxamine 5'-phosphate oxidase family protein -
  LLC_RS09395 (LLC_19380) - 1855532..1855963 (+) 432 WP_011677172.1 DUF3290 domain-containing protein -
  LLC_RS09400 (LLC_19390) - 1855981..1856616 (+) 636 WP_011677171.1 DUF421 domain-containing protein -
  LLC_RS09405 (LLC_19400) - 1857002..1859233 (+) 2232 WP_061777877.1 PBP1A family penicillin-binding protein -
  LLC_RS09410 (LLC_19410) - 1859335..1861152 (+) 1818 WP_126354658.1 acyltransferase family protein -
  LLC_RS09415 (LLC_19420) rpmG 1861193..1861342 (+) 150 WP_011677168.1 50S ribosomal protein L33 -
  LLC_RS09420 (LLC_19430) secE 1861454..1861648 (+) 195 WP_011677167.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=84161 LLC_RS14270 WP_014573336.1 1848182..1848370(+) (comGD) [Lactococcus cremoris strain EPSC]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=84161 LLC_RS14270 WP_014573336.1 1848182..1848370(+) (comGD) [Lactococcus cremoris strain EPSC]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371

Multiple sequence alignment