Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QOM08_RS04005 | Genome accession | NZ_CP126693 |
| Coordinates | 920690..921109 (+) | Length | 139 a.a. |
| NCBI ID | WP_047229858.1 | Uniprot ID | A0A1N7GWW4 |
| Organism | Pseudomonas sp. P105 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 915690..926109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOM08_RS03980 (QOM08_03975) | yacG | 915841..916041 (-) | 201 | WP_047229863.1 | DNA gyrase inhibitor YacG | - |
| QOM08_RS03985 (QOM08_03980) | coaE | 916038..916661 (-) | 624 | WP_316912585.1 | dephospho-CoA kinase | - |
| QOM08_RS03990 (QOM08_03985) | pilD | 916673..917542 (-) | 870 | WP_047229861.1 | prepilin peptidase | Machinery gene |
| QOM08_RS03995 (QOM08_03990) | pilC | 917544..918761 (-) | 1218 | WP_076386354.1 | type II secretion system F family protein | Machinery gene |
| QOM08_RS04000 (QOM08_03995) | pilB | 918764..920464 (-) | 1701 | WP_047229859.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QOM08_RS04005 (QOM08_04000) | pilA | 920690..921109 (+) | 420 | WP_047229858.1 | pilin | Machinery gene |
| QOM08_RS04010 (QOM08_04005) | - | 921390..921743 (+) | 354 | WP_047229857.1 | BON domain-containing protein | - |
| QOM08_RS04015 (QOM08_04010) | - | 922067..922363 (-) | 297 | WP_047229856.1 | DUF2845 domain-containing protein | - |
| QOM08_RS04020 (QOM08_04015) | - | 922365..925298 (-) | 2934 | WP_316912586.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 13927.05 Da Isoelectric Point: 7.5917
>NTDB_id=839474 QOM08_RS04005 WP_047229858.1 920690..921109(+) (pilA) [Pseudomonas sp. P105]
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
Nucleotide
Download Length: 420 bp
>NTDB_id=839474 QOM08_RS04005 WP_047229858.1 920690..921109(+) (pilA) [Pseudomonas sp. P105]
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACCCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACCCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
48.551 |
99.281 |
0.482 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.175 |
98.561 |
0.475 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.432 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
97.122 |
0.417 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.621 |
100 |
0.403 |
| pilA2 | Legionella pneumophila str. Paris |
38.621 |
100 |
0.403 |
| comP | Acinetobacter baylyi ADP1 |
36.424 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae strain A1552 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae C6706 |
36.986 |
100 |
0.388 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.625 |
92.086 |
0.374 |