Detailed information NTG0839471

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QOM08_RS03990
• Genome accession: NZ_CP126693
• Coordinates: 916673..917542 (-)
• Length: 289 a.a.
• NCBI ID: WP_047229861.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P105
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 911673..922542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM08_RS03950 (QOM08_03945)	-	911962..913260 (-)	1299	WP_316912584.1	NAD(P)/FAD-dependent oxidoreductase	-
QOM08_RS03955 (QOM08_03950)	-	913321..913494 (-)	174	WP_076386361.1	DUF3094 family protein	-
QOM08_RS03960 (QOM08_03955)	-	913547..914074 (-)	528	WP_107322954.1	MOSC domain-containing protein	-
QOM08_RS03965 (QOM08_03960)	-	914071..914697 (-)	627	WP_047229866.1	DUF1780 domain-containing protein	-
QOM08_RS03970 (QOM08_03965)	-	914843..915529 (+)	687	WP_047229865.1	energy-coupling factor ABC transporter permease	-
QOM08_RS03975 (QOM08_03970)	-	915593..915808 (+)	216	WP_076386357.1	hypothetical protein	-
QOM08_RS03980 (QOM08_03975)	yacG	915841..916041 (-)	201	WP_047229863.1	DNA gyrase inhibitor YacG	-
QOM08_RS03985 (QOM08_03980)	coaE	916038..916661 (-)	624	WP_316912585.1	dephospho-CoA kinase	-
QOM08_RS03990 (QOM08_03985)	pilD	916673..917542 (-)	870	WP_047229861.1	prepilin peptidase	Machinery gene
QOM08_RS03995 (QOM08_03990)	pilC	917544..918761 (-)	1218	WP_076386354.1	type II secretion system F family protein	Machinery gene
QOM08_RS04000 (QOM08_03995)	pilB	918764..920464 (-)	1701	WP_047229859.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QOM08_RS04005 (QOM08_04000)	pilA	920690..921109 (+)	420	WP_047229858.1	pilin	Machinery gene
QOM08_RS04010 (QOM08_04005)	-	921390..921743 (+)	354	WP_047229857.1	BON domain-containing protein	-
QOM08_RS04015 (QOM08_04010)	-	922067..922363 (-)	297	WP_047229856.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31869.04 Da
• Isoelectric Point: 8.0377

>NTDB_id=839471 QOM08_RS03990 WP_047229861.1 916673..917542(-) (pilD) [Pseudomonas sp. P105]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWYFGFGWQAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS

Nucleotide

• Length: 870 bp

>NTDB_id=839471 QOM08_RS03990 WP_047229861.1 916673..917542(-) (pilD) [Pseudomonas sp. P105]
ATGCCCCTGACTGAGTTTTTCGCGCTGTATCCCCTGGCCTTTGTGCTCGCCGCGTTGTTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAACATTCCGCTATTGAGTTACCTGGCATTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATTGGCCGGCG
CTATCCCCTGACCGAACTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGTATTTCGGCTTTGGTTGGCAGGCCGCAA
TGGTGATGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGTTGCCCGACACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCCCCTTGAATCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCTCCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Acinetobacter nosocomialis M2	48.905	94.81	0.464