NTDB

Overview

Name	pilU	Type	Machinery gene
Locus tag	QOM10_RS13075	Genome accession	NZ_CP126691
Coordinates	2983154..2984263 (+)	Length	369 a.a.
NCBI ID	WP_127927131.1	Uniprot ID	-
Organism	Pseudomonas sp. P108
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2978154..2989263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM10_RS13060 (QOM10_13065)	-	2979130..2980068 (+)	939	WP_150752047.1	sugar kinase	-
QOM10_RS13065 (QOM10_13070)	-	2980176..2980451 (-)	276	WP_007912322.1	peptidylprolyl isomerase	-
QOM10_RS13070 (QOM10_13075)	-	2980503..2983040 (-)	2538	WP_316918223.1	PAS domain S-box protein	-
QOM10_RS13075 (QOM10_13080)	pilU	2983154..2984263 (+)	1110	WP_127927131.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QOM10_RS13080 (QOM10_13085)	-	2984397..2988164 (+)	3768	WP_316918224.1	hypothetical protein	-

Sequence

Protein

Download Length: 369 a.a. Molecular weight: 40693.52 Da Isoelectric Point: 6.5984

                                >NTDB_id=839442 QOM10_RS13075 WP_127927131.1 2983154..2984263(+) (pilU) [Pseudomonas sp. P108]

MEIDALLSVLSNKNGSDLFLSTGAPPSARVDGVLTALSEQPFKIGETAAIAASLMDAEQRREFDRDLEMNLAISRTGIGR

FRVNIFKQRNDVSIVIRNVKLDIPRFADLKLPPVLLDTVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSTGHIITIED

PIEYIHRHQRSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVLSTLHATNANQALDRI

INMFPEERRPQLLQTLGNNLKAFISQRLVRTVDGQRRAAVEVLLGTPTIADLIRRGQFDELKPIMEKSTELGMQTFDAAL

FSLVAEGAISAQEALKNADSINNLKLRIKLAGDESSNNGSPSGEWGLMD

Nucleotide

Download Length: 1110 bp

                                >NTDB_id=839442 QOM10_RS13075 WP_127927131.1 2983154..2984263(+) (pilU) [Pseudomonas sp. P108]

ATGGAAATCGATGCACTGTTGTCAGTTTTGTCCAATAAAAACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCGCCCAG

TGCGCGGGTCGACGGCGTGCTCACGGCGTTGAGCGAGCAGCCTTTCAAGATCGGTGAAACCGCCGCCATCGCCGCCTCCC

TGATGGACGCCGAGCAACGACGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCGCGAACGGGCATCGGCCGC

TTTCGCGTGAACATCTTCAAACAGCGCAACGATGTATCGATCGTTATCCGCAACGTCAAACTCGACATCCCGCGCTTCGC

TGACCTGAAACTGCCGCCGGTACTGCTCGACACCGTCATGCTCAAGCAAGGGTTGATCCTGTTTGTCGGCGCCACCGATT

CGGGTAAGTCGACTTCGCTGGCGGCATTGATCGACCACCGCAACCGCCACAGCACCGGGCACATCATCACCATCGAGGAT

CCGATCGAGTACATCCATCGGCACCAGCGTTCAATCATCAATCAACGTGAAGTCGGGGTCGATACGCGCAGTTTTCATGC

GGCGTTGAAGAACACTTTGCGCCAGGCGCCGGATGTAGTGCTGATCGGTGAAATCCGTGATCGCGAAACCATGGAACATG

CATTGGCGTTTGCCGATACCGGACATCTGGTGCTATCGACGTTGCATGCCACTAACGCCAATCAGGCGCTGGATCGAATT

ATCAATATGTTCCCGGAAGAGCGGCGACCGCAGTTATTGCAGACGCTGGGCAATAACCTGAAAGCATTTATCTCGCAACG

ATTGGTGCGCACTGTCGATGGCCAACGACGGGCTGCTGTCGAGGTGCTGTTGGGCACGCCAACCATCGCTGATCTGATCC

GACGCGGTCAGTTCGATGAACTCAAACCGATCATGGAGAAATCCACCGAACTGGGTATGCAGACATTTGATGCAGCGTTG

TTTTCGTTGGTTGCCGAAGGTGCAATCAGTGCGCAGGAGGCTTTGAAAAATGCAGACTCGATCAATAATCTTAAATTACG

AATCAAACTGGCTGGAGATGAAAGTAGTAATAATGGTTCGCCGTCAGGGGAGTGGGGACTAATGGATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(50-271)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilU	Pseudomonas stutzeri DSM 10701	55.707	99.729	0.556
pilU	Acinetobacter baylyi ADP1	54.108	95.664	0.518
pilU	Vibrio cholerae strain A1552	50.97	97.832	0.499
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.945	98.374	0.393
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	40.541	90.244	0.366
pilT	Vibrio cholerae strain A1552	40.541	90.244	0.366
pilT	Pseudomonas stutzeri DSM 10701	39.244	93.225	0.366
pilT	Acinetobacter baumannii D1279779	40	90.786	0.363
pilT	Acinetobacter baumannii strain A118	40	90.786	0.363
pilT	Pseudomonas aeruginosa PAK	38.953	93.225	0.363
pilT	Acinetobacter baylyi ADP1	39.118	92.141	0.36
pilT	Acinetobacter nosocomialis M2	39.701	90.786	0.36

Detailed information NTG0839442