Detailed information NTG0831916

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QFW87_RS11980
• Genome accession: NZ_CP125618
• Coordinates: 2642035..2643144 (+)
• Length: 369 a.a.
• NCBI ID: WP_283190588.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PMCC200344
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2637035..2648144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW87_RS11965	-	2638089..2639024 (+)	936	WP_283190586.1	sugar kinase	-
QFW87_RS11970	-	2639036..2639311 (-)	276	WP_007898282.1	peptidylprolyl isomerase	-
QFW87_RS11975	-	2639377..2641914 (-)	2538	WP_283190587.1	PAS domain S-box protein	-
QFW87_RS11980	pilU	2642035..2643144 (+)	1110	WP_283190588.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QFW87_RS11985	-	2643261..2645216 (-)	1956	WP_283190589.1	acetoacetate--CoA ligase	-
QFW87_RS11990	hbdH	2645298..2646071 (-)	774	WP_283190590.1	3-hydroxybutyrate dehydrogenase	-
QFW87_RS11995	-	2646079..2647470 (-)	1392	WP_283180456.1	GntP family permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 41006.95 Da
• Isoelectric Point: 6.5085

>NTDB_id=831916 QFW87_RS11980 WP_283190588.1 2642035..2643144(+) (pilU) [Pseudomonas sp. PMCC200344]
MEIDALLRLLASQNGSDLYLSTGAPPSARFEGVLRPLADQPFKPGEVAAIAASIMDAEQRLEFDRELEMNLAISLTGIGR
FRVNIFKQRNDVSVVARNIKLDIPRFEDLKLPPVLLETVMLKQGLMLFVGATDSGKSTSLAALIDYRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRI
INFFPEERRTQLLHDLGNNLKAFVSQRLVHTRDGQRRAAVEVMLGTPTVGDLIRRNELSELKGIMEKSVELGMQTFDGAL
YALVVDGAINEEEALKHADSVNNLRLRLKLHAEASPGPHAPPGEWGLMD

Nucleotide

• Length: 1110 bp

>NTDB_id=831916 QFW87_RS11980 WP_283190588.1 2642035..2643144(+) (pilU) [Pseudomonas sp. PMCC200344]
ATGGAAATCGATGCACTGTTAAGGCTCCTGGCCAGCCAGAATGGCTCCGATCTTTATCTGTCTACCGGTGCGCCACCCAG
CGCACGGTTCGAGGGTGTGCTTAGACCCTTGGCCGATCAGCCATTCAAGCCGGGAGAAGTCGCGGCCATTGCCGCGTCCA
TCATGGACGCCGAACAGCGTCTGGAGTTCGATCGGGAGCTGGAGATGAACCTGGCGATTTCTTTGACCGGTATCGGGCGC
TTTCGGGTCAATATCTTTAAACAACGCAACGATGTGTCAGTCGTGGCGCGCAACATCAAGCTCGACATTCCGCGTTTCGA
AGACCTCAAACTGCCGCCGGTGCTGCTCGAGACTGTGATGCTCAAACAAGGATTGATGCTGTTCGTCGGCGCTACCGACT
CGGGTAAGTCAACCTCGCTGGCAGCATTGATCGACTACCGCAATCGCCACAGCAGTGGCCACATCATCACCATTGAAGAC
CCGGTCGAGTACATCCATCGGCACAAGAAGTCGATCATCAACCAGCGTGAGGTCGGCGTCGATACCCGCAGTTTTCACGC
CGCATTGAAAAATACCTTGCGCCAGGCACCGGACGTGGTGTTGATCGGCGAAATTCGTGACCGCGAGACGATGGAGCACG
CGCTGGCGTTTGCCGATACCGGTCATCTGGTTATCTCCACCCTGCATGCCCACAACGCCAATCAGGCGCTGGACCGGATC
ATCAACTTCTTTCCCGAGGAGCGCCGGACGCAGCTGCTTCATGATCTGGGCAACAACCTCAAGGCATTCGTTTCCCAGCG
GTTGGTGCATACCCGTGACGGTCAGCGACGGGCGGCGGTGGAAGTGATGCTCGGGACGCCAACCGTCGGCGACCTGATTC
GGCGCAATGAGTTATCCGAGCTCAAGGGGATTATGGAGAAGTCTGTAGAACTGGGGATGCAGACGTTCGACGGAGCGCTT
TACGCGTTGGTCGTCGATGGGGCGATCAATGAGGAGGAAGCGTTGAAGCATGCGGATTCGGTGAACAACTTGCGCTTGCG
GCTGAAGCTGCACGCCGAAGCGTCACCGGGTCCCCATGCGCCGCCGGGCGAATGGGGACTCATGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (115-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	57.065	99.729	0.569
pilU	Acinetobacter baylyi ADP1	53.221	96.748	0.515
pilU	Vibrio cholerae strain A1552	51.714	94.851	0.491
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.13	99.729	0.39
pilT	Pseudomonas aeruginosa PAK	40.116	93.225	0.374
pilT	Pseudomonas stutzeri DSM 10701	39.826	93.225	0.371
pilT	Vibrio cholerae strain A1552	40.841	90.244	0.369
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	40.841	90.244	0.369
pilT	Legionella pneumophila strain Lp02	40.419	90.515	0.366
pilT	Legionella pneumophila strain ERS1305867	40.419	90.515	0.366
pilT	Neisseria gonorrhoeae MS11	38.841	93.496	0.363
pilT	Neisseria meningitidis 8013	38.841	93.496	0.363