Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/comX2   Type   Regulator
Locus tag   QL280_RS00070 Genome accession   NZ_CP125291
Coordinates   14254..14733 (+) Length   159 a.a.
NCBI ID   WP_000588900.1    Uniprot ID   A0A4J2BPQ8
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 9254..19733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS00055 (QL280_00055) tilS 10335..11612 (+) 1278 WP_001208982.1 tRNA lysidine(34) synthetase TilS -
  QL280_RS00060 (QL280_00060) hpt 11616..12158 (+) 543 WP_000892184.1 hypoxanthine phosphoribosyltransferase -
  QL280_RS00065 (QL280_00065) ftsH 12174..14132 (+) 1959 WP_282959417.1 ATP-dependent zinc metalloprotease FtsH -
  QL280_RS00070 (QL280_00070) comX/comX2 14254..14733 (+) 480 WP_000588900.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence


Protein


Download         Length: 159 a.a.        Molecular weight: 19899.55 Da        Isoelectric Point: 7.3186

>NTDB_id=830793 QL280_RS00070 WP_000588900.1 14254..14733(+) (comX/comX2) [Streptococcus pneumoniae strain 105_Kz]
MIKELYEEVQGTVYKCRNEYYLHLWELSDWDQEGMLCLHELISREEGLVDDIPRLRKYFKTKFRNRILDYIRKQESQKRR
YDKEPYEEVGEISHRISEGGLWLDDYYLFHETLRDYRNKQSKEKQEELERVLSNERFRGRQRVLRDLRIVFKEFTIRTY

Nucleotide


Download         Length: 480 bp        

>NTDB_id=830793 QL280_RS00070 WP_000588900.1 14254..14733(+) (comX/comX2) [Streptococcus pneumoniae strain 105_Kz]
ATGATTAAAGAATTGTATGAAGAAGTCCAAGGGACTGTGTATAAGTGTAGAAATGAATATTACCTTCATTTATGGGAATT
GTCGGATTGGGACCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGGACTGGTAGACGATATTCCAC
GTTTAAGGAAATATTTCAAAACCAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAGCAGGAAAGTCAGAAGCGTAGA
TACGATAAAGAACCCTATGAAGAAGTGGGTGAGATCAGTCATCGTATAAGTGAGGGGGGTCTCTGGCTAGATGATTATTA
TCTCTTTCATGAAACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAACTAGAACGCGTCTTAAGCA
ATGAACGATTTCGAGGGCGTCAAAGAGTATTAAGAGACTTACGCATTGTGTTTAAGGAGTTTACTATCCGTACCTATTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4J2BPQ8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae Rx1

99.371

100

0.994

  comX/comX2 Streptococcus pneumoniae D39

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae D39

99.371

100

0.994

  comX/comX2 Streptococcus pneumoniae R6

99.371

100

0.994

  comX/comX1 Streptococcus pneumoniae R6

99.371

100

0.994

  comX/comX2 Streptococcus pneumoniae TIGR4

98.742

100

0.987

  comX/comX1 Streptococcus pneumoniae TIGR4

98.742

100

0.987

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

91.824

100

0.918

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

91.824

100

0.918

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

91.139

99.371

0.906

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

89.241

99.371

0.887

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478

  comX/sigX Streptococcus mutans UA159

46

94.34

0.434

  comX/sigX Streptococcus suis isolate S10

45.695

94.969

0.434

  comX/sigX Streptococcus suis D9

45.695

94.969

0.434

  comX/sigX Streptococcus suis P1/7

45.695

94.969

0.434

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.216

96.226

0.377

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.216

96.226

0.377

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

94.34

0.377

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

94.34

0.377

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

94.34

0.377

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

94.34

0.377