Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C12CBH8_RS08675 Genome accession   NZ_AP023321
Coordinates   1834646..1836499 (-) Length   617 a.a.
NCBI ID   WP_215533024.1    Uniprot ID   A0A7I8D5M2
Organism   Solibaculum mannosilyticum strain 12CBH8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829646..1841499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C12CBH8_RS08645 - 1830224..1830412 (+) 189 WP_093988343.1 cysteine-rich KTR domain-containing protein -
  C12CBH8_RS08650 (C12CBH8_16770) - 1830754..1831200 (+) 447 WP_215533815.1 sigma-70 family RNA polymerase sigma factor -
  C12CBH8_RS08655 (C12CBH8_16780) - 1831190..1831393 (+) 204 WP_215533022.1 helix-turn-helix domain-containing protein -
  C12CBH8_RS08660 - 1831732..1831832 (-) 101 Protein_1674 helix-turn-helix domain-containing protein -
  C12CBH8_RS08665 (C12CBH8_16790) - 1832216..1832968 (-) 753 WP_099322556.1 aminoglycoside phosphotransferase family protein -
  C12CBH8_RS08670 (C12CBH8_16800) - 1833184..1834437 (+) 1254 WP_215533023.1 [Fe-Fe] hydrogenase large subunit C-terminal domain-containing protein -
  C12CBH8_RS08675 (C12CBH8_16810) rcrQ 1834646..1836499 (-) 1854 WP_215533024.1 ABC transporter ATP-binding protein Regulator
  C12CBH8_RS08680 (C12CBH8_16820) - 1836496..1838736 (-) 2241 WP_215533025.1 ABC transporter ATP-binding protein -
  C12CBH8_RS08685 (C12CBH8_16830) - 1838769..1839257 (-) 489 WP_090264475.1 MarR family transcriptional regulator -
  C12CBH8_RS08690 (C12CBH8_16840) pfkA 1839523..1840491 (-) 969 WP_090264477.1 6-phosphofructokinase -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68673.27 Da        Isoelectric Point: 8.8515

>NTDB_id=82384 C12CBH8_RS08675 WP_215533024.1 1834646..1836499(-) (rcrQ) [Solibaculum mannosilyticum strain 12CBH8]
MSKQTSPRRRGPMGHGPMGASGEKAKDFKGTSKKLLKYLGKYKVSIAVVILFAIASTIFTIVGPKILGKATTKLFEGVME
MVGGSGSGIDFGYIGMILGSLLGLYLVSALFSYIQGFLMSGVSMKVTYNLRRDISIKIHKLPLKYFDQRSYGEVLSHITN
DVDSVSQTLNQSLTQIITSATTLVGILVMMFSISWQMTLVALCIIPLSLFFVLFIVKRSQKYFKSQQDYLGHVNGHVEEM
YGAHTLVKAFNGEEQSGKTFDQYNEKLYNSAWKSQFLSGLMQPVMNFIGNLGYVAVCILGGYLAIQGRISVGDIQAFIQY
VRQFTQPITQVANISNILQQTMASAERVFEFLDEKEAEPDTDHPASTDNIQGSVEFKHVKFGYHSDRIIIKDFSARIKPG
QKVAIVGPTGAGKTTMVKLLMRFYDVNSGEILVDGINIKDFTRNDLRSLFGMVLQDTWLYNDTIKENIRYGRLDATDEEI
YAAAKAAQVHHFVRTLPGHYNMVLNEEASNVSQGEKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGR
TSFIIAHRLSTIRDADLILVMRDGDIVEQGTHQELLEKGGFYANLYNSQFERQGEGA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=82384 C12CBH8_RS08675 WP_215533024.1 1834646..1836499(-) (rcrQ) [Solibaculum mannosilyticum strain 12CBH8]
ATGAGCAAACAGACCTCTCCTAGAAGGCGTGGACCTATGGGACACGGTCCCATGGGAGCTTCCGGCGAAAAGGCCAAAGA
CTTTAAGGGGACTTCCAAAAAGCTGCTGAAGTATTTGGGGAAATACAAAGTATCCATCGCCGTAGTTATTTTATTTGCCA
TTGCCTCCACCATCTTTACCATTGTGGGACCGAAGATCCTGGGAAAAGCCACGACGAAATTGTTTGAAGGCGTTATGGAA
ATGGTAGGAGGTTCCGGATCGGGCATCGACTTTGGCTACATCGGCATGATCCTGGGATCCCTGTTGGGATTGTATCTCGT
CAGCGCCCTATTCTCCTATATTCAGGGCTTCCTGATGTCAGGCGTATCCATGAAGGTGACTTATAATCTCCGACGGGATA
TCTCCATCAAGATCCACAAGCTGCCCCTCAAGTACTTCGACCAGCGCAGCTATGGTGAAGTGCTGTCCCACATCACCAAC
GACGTGGATTCCGTCAGCCAGACCCTCAACCAGAGTTTAACCCAGATCATCACATCGGCCACCACTCTCGTCGGGATCCT
GGTGATGATGTTTTCCATAAGCTGGCAGATGACGCTGGTAGCGCTCTGCATTATCCCACTCTCGCTGTTTTTTGTACTGT
TTATTGTCAAGCGGTCCCAAAAGTACTTTAAGTCGCAGCAGGATTACCTGGGCCACGTCAACGGCCACGTGGAAGAAATG
TACGGCGCCCATACCTTGGTCAAAGCCTTCAACGGCGAAGAACAGTCGGGCAAGACCTTTGACCAGTACAATGAAAAGCT
CTACAATTCCGCTTGGAAATCCCAATTTTTGTCCGGCCTCATGCAGCCGGTGATGAACTTCATCGGGAACTTGGGTTACG
TGGCCGTGTGTATCCTGGGCGGATACCTTGCCATCCAGGGACGTATTTCGGTGGGTGACATCCAGGCGTTTATCCAGTAT
GTCCGCCAGTTTACCCAGCCTATCACCCAGGTGGCCAACATCTCCAATATTCTCCAGCAGACCATGGCCTCGGCCGAACG
TGTCTTTGAATTCCTGGACGAGAAAGAAGCCGAACCCGACACCGATCATCCGGCGTCCACCGATAACATCCAGGGCAGTG
TGGAGTTTAAACACGTAAAATTCGGATACCATTCCGACCGCATCATCATCAAGGATTTCTCCGCCCGCATCAAGCCGGGA
CAAAAGGTGGCCATCGTCGGCCCCACAGGCGCTGGAAAGACCACCATGGTCAAACTGCTCATGCGGTTTTACGATGTAAA
CAGCGGTGAAATTTTAGTGGACGGCATCAACATCAAAGACTTTACCCGCAACGATCTGCGGTCCCTCTTCGGCATGGTGC
TTCAGGATACCTGGCTTTACAACGACACCATCAAAGAGAACATCCGTTACGGACGTCTCGACGCCACCGATGAAGAGATT
TATGCCGCCGCCAAAGCCGCCCAAGTGCATCATTTTGTGCGCACTCTGCCCGGGCATTATAATATGGTGCTCAATGAGGA
GGCCAGCAACGTCTCCCAGGGCGAGAAACAGCTTTTGACCATCGCCCGTGCCATTCTAGCCGATCCCAAGATCCTTATTC
TGGACGAAGCCACCAGCTCGGTGGACACCAGGACCGAGGTGCTCATCCAGAAGGCCATGGACAATCTCATGAAGGGACGC
ACCAGTTTTATCATCGCCCACCGTCTTTCCACCATCCGCGACGCCGACCTCATTTTGGTCATGCGGGACGGCGACATTGT
GGAACAGGGGACTCATCAAGAACTGCTTGAAAAAGGCGGGTTCTACGCCAACTTGTACAACAGCCAGTTTGAACGTCAGG
GGGAGGGAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-327)

ABC transporter (ABC_tran)

(391-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8D5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.596

95.138

0.481

Multiple sequence alignment