Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QCD61_RS23515 Genome accession   NZ_CP123771
Coordinates   5387400..5387825 (-) Length   141 a.a.
NCBI ID   WP_135847212.1    Uniprot ID   -
Organism   Pseudomonas viciae strain YsS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5382400..5392825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD61_RS23500 (QCD61_23500) - 5383148..5386081 (+) 2934 WP_256453757.1 DUF748 domain-containing protein -
  QCD61_RS23505 (QCD61_23505) - 5386092..5386388 (+) 297 WP_256454432.1 DUF2845 domain-containing protein -
  QCD61_RS23510 (QCD61_23510) - 5386700..5387053 (-) 354 WP_135847211.1 BON domain-containing protein -
  QCD61_RS23515 (QCD61_23515) pilA 5387400..5387825 (-) 426 WP_135847212.1 pilin Machinery gene
  QCD61_RS23520 (QCD61_23520) pilB 5388050..5389750 (+) 1701 WP_135847213.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QCD61_RS23525 (QCD61_23525) pilC 5389753..5390970 (+) 1218 WP_135847214.1 type II secretion system F family protein Machinery gene
  QCD61_RS23530 (QCD61_23530) pilD 5390972..5391841 (+) 870 WP_135847215.1 A24 family peptidase Machinery gene
  QCD61_RS23535 (QCD61_23535) coaE 5391853..5392476 (+) 624 WP_135847216.1 dephospho-CoA kinase -
  QCD61_RS23540 (QCD61_23540) yacG 5392473..5392679 (+) 207 WP_135847217.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14082.18 Da        Isoelectric Point: 8.1045

>NTDB_id=822657 QCD61_RS23515 WP_135847212.1 5387400..5387825(-) (pilA) [Pseudomonas viciae strain YsS1]
MNKQKGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEISALKVPYEDAMNQGTDPSVANMNITSPTSNCTIT
ITGTAAAGAGTIVCTLTNAPAAVAGKTITLSRTAAGAWTCGSNAAQEYLPAGCTGAAAAAG

Nucleotide


Download         Length: 426 bp        

>NTDB_id=822657 QCD61_RS23515 WP_135847212.1 5387400..5387825(-) (pilA) [Pseudomonas viciae strain YsS1]
ATGAACAAGCAGAAGGGTTTTACGCTGATCGAGCTGCTGATCGTCGTGGCGATCATCGGCATTCTGGCGACGTTCGCGTT
GCCGCAGTATTCCAAGTACCAGGCGCGGGCCAAGGCCACCGCCGGGTTGGCGGAGATTTCTGCGTTGAAGGTGCCGTATG
AGGACGCCATGAATCAAGGTACCGATCCCTCTGTGGCTAACATGAACATAACCTCGCCTACCAGTAACTGCACAATTACG
ATCACAGGTACCGCCGCAGCGGGTGCAGGCACTATCGTCTGTACCCTCACCAACGCCCCTGCTGCCGTAGCCGGTAAGAC
GATCACTCTTTCTCGCACAGCTGCGGGTGCCTGGACGTGCGGTTCCAATGCCGCTCAAGAGTATCTGCCCGCCGGCTGTA
CCGGTGCTGCTGCCGCTGCTGGTTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-134)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

46.897

100

0.482
  pilA/pilAI Pseudomonas stutzeri DSM 10701

47.445

97.163

0.461
  pilA Ralstonia pseudosolanacearum GMI1000

38.75

100

0.44
  pilA2 Legionella pneumophila str. Paris

42.069

100

0.433
  pilA Pseudomonas aeruginosa PAK

40.397

100

0.433
  pilA2 Legionella pneumophila strain ERS1305867

41.379

100

0.426
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.444

95.745

0.426
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.726

100

0.411
  pilA Vibrio cholerae C6706

39.726

100

0.411
  pilA Vibrio cholerae strain A1552

39.726

100

0.411
  pilA/pilA1 Eikenella corrodens VA1

38

100

0.404
  comP Acinetobacter baylyi ADP1

38.255

100

0.404