Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R5018_RS11240 Genome accession   NZ_CP137491
Coordinates   2318328..2318792 (+) Length   154 a.a.
NCBI ID   WP_031630343.1    Uniprot ID   Q93PL5
Organism   Pseudomonas aeruginosa strain HPA1406     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313328..2323792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5018_RS11215 (R5018_11215) yacG 2313493..2313693 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  R5018_RS11220 (R5018_11220) coaE 2313690..2314301 (-) 612 WP_003094654.1 dephospho-CoA kinase -
  R5018_RS11225 (R5018_11225) pilD 2314298..2315170 (-) 873 WP_003094651.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  R5018_RS11230 (R5018_11230) pilC 2315174..2316394 (-) 1221 WP_003094649.1 type II secretion system F family protein Machinery gene
  R5018_RS11235 (R5018_11235) pilB 2316398..2318098 (-) 1701 WP_003094647.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R5018_RS11240 (R5018_11240) pilA 2318328..2318792 (+) 465 WP_031630343.1 pilin Machinery gene
  R5018_RS11250 (R5018_11250) nadC 2318996..2319844 (-) 849 WP_003094645.1 carboxylating nicotinate-nucleotide diphosphorylase -
  R5018_RS11255 (R5018_11255) - 2320130..2322385 (+) 2256 WP_003094643.1 DUF1631 domain-containing protein -
  R5018_RS11260 (R5018_11260) ampD 2322536..2323102 (+) 567 WP_126892710.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15780.91 Da        Isoelectric Point: 6.1571

>NTDB_id=820878 R5018_RS11240 WP_031630343.1 2318328..2318792(+) (pilA) [Pseudomonas aeruginosa strain HPA1406]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVSRSQVSRVMAEAGSLKTAVEACLQDGRTAVGTAAGQCDPGATGSSL
LTGASQTSQTLPTNTGVPQVLDPLTTQTTIIATFGNGASAAISGQTLTWTRDVNGGWSCATTVDAKFRPNGCTD

Nucleotide


Download         Length: 465 bp        

>NTDB_id=820878 R5018_RS11240 WP_031630343.1 2318328..2318792(+) (pilA) [Pseudomonas aeruginosa strain HPA1406]
ATGAAAGCACAGAAGGGTTTTACTCTGATTGAACTGATGATCGTAGTTGCGATCATTGGTATTCTGGCTGCAATCGCAAT
TCCCCAATATCAGAACTATGTTTCTCGCTCTCAGGTCTCCAGGGTTATGGCAGAGGCTGGCTCCTTGAAGACTGCAGTTG
AGGCCTGCCTCCAGGATGGTCGTACTGCTGTGGGTACTGCTGCTGGTCAATGCGACCCGGGTGCGACGGGTTCCAGTTTG
TTGACTGGTGCTTCTCAGACTTCTCAAACCCTGCCAACCAATACCGGTGTTCCGCAGGTTCTGGATCCTCTGACTACTCA
AACCACTATCATTGCGACTTTTGGTAACGGTGCATCCGCAGCTATTTCTGGCCAGACTCTGACCTGGACTCGTGATGTTA
ATGGTGGCTGGAGCTGTGCTACTACCGTAGATGCTAAATTCCGTCCTAATGGCTGTACTGACTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93PL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

46.753

100

0.468
  pilA Vibrio cholerae strain A1552

43.59

100

0.442
  pilA Vibrio cholerae C6706

43.59

100

0.442
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

43.59

100

0.442
  comP Acinetobacter baylyi ADP1

40.12

100

0.435
  pilA Vibrio parahaemolyticus RIMD 2210633

40.881

100

0.422
  pilA Acinetobacter baumannii strain A118

41.83

99.351

0.416
  pilA2 Legionella pneumophila strain ERS1305867

41.558

100

0.416
  pilA2 Legionella pneumophila str. Paris

40.909

100

0.409
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40

100

0.403
  pilE Neisseria gonorrhoeae MS11

33.908

100

0.383
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.411

98.052

0.377