Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P7V53_RS28305 Genome accession   NZ_CP123228
Coordinates   5979562..5980668 (-) Length   368 a.a.
NCBI ID   WP_280152825.1    Uniprot ID   -
Organism   Piscinibacter sp. XHJ-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5974562..5985668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7V53_RS28285 - 5976253..5976495 (-) 243 WP_280152822.1 PP0621 family protein -
  P7V53_RS28290 ccsA 5976500..5977303 (-) 804 WP_280152823.1 cytochrome c biogenesis protein CcsA -
  P7V53_RS28295 ffh 5977374..5978735 (+) 1362 WP_280156635.1 signal recognition particle protein -
  P7V53_RS28300 - 5978827..5979555 (+) 729 WP_280152824.1 DUF2726 domain-containing protein -
  P7V53_RS28305 pilA 5979562..5980668 (-) 1107 WP_280152825.1 signal recognition particle-docking protein FtsY Machinery gene
  P7V53_RS28315 - 5980890..5981618 (-) 729 WP_280152826.1 GntR family transcriptional regulator -
  P7V53_RS28320 hpxZ 5981615..5982013 (-) 399 WP_280152827.1 oxalurate catabolism protein HpxZ -
  P7V53_RS28325 atzF 5982010..5983812 (-) 1803 WP_348273453.1 allophanate hydrolase -
  P7V53_RS28330 - 5983818..5984486 (-) 669 WP_280152829.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39123.98 Da        Isoelectric Point: 5.1837

>NTDB_id=820103 P7V53_RS28305 WP_280152825.1 5979562..5980668(-) (pilA) [Piscinibacter sp. XHJ-5]
MFSFFKKKTPADAVAPPPDAPVAPPVPSAAPAERTWRERLGFGAPPAPSTEPAIEAPPPTPQPEPPSPEERKTWLDKLRL
GLRKTGTSIAQVFTGTQIDDALYEELEAALLMADTGVKATEFLLADLKQRVKDARAIDPSAVKSLLADAVTDLLRPLEKQ
LTIGEALPTVMMVAGVNGAGKTTSIGKLTRHLADGGEKVLLAAADTFRAAAREQLAVWAGRTNVEIVSQEGGDPSAVTFD
AVLAGKARRCDVVIADTAGRLPTQLHLMEELRKIKRTIAKAQEGAPHEILLVVDGNTGQNALTQVKAFDDALQLTGLIVT
KLDGTAKGGMLAAIARERPVPVYFIGVGEKLEDLETFDAREFANALLA

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=820103 P7V53_RS28305 WP_280152825.1 5979562..5980668(-) (pilA) [Piscinibacter sp. XHJ-5]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCGGCCGACGCCGTTGCTCCGCCCCCGGACGCACCGGTCGCGCCGCCGGTTCC
GTCCGCGGCGCCCGCCGAGCGCACCTGGCGCGAGCGACTCGGCTTCGGTGCGCCGCCGGCCCCGTCGACCGAGCCGGCGA
TCGAGGCGCCGCCACCGACGCCGCAGCCCGAGCCCCCGTCGCCCGAGGAGCGCAAGACCTGGCTCGACAAGCTGCGCCTC
GGCTTGCGCAAGACAGGCACCAGCATCGCGCAGGTGTTCACCGGCACGCAGATCGACGATGCGCTGTACGAGGAGCTCGA
GGCCGCCCTGCTGATGGCCGACACGGGCGTGAAGGCCACCGAGTTCCTGCTCGCCGATCTCAAGCAGCGCGTGAAGGACG
CACGCGCCATCGATCCGTCCGCCGTCAAGTCCCTGCTGGCCGACGCCGTCACCGACCTGCTGCGCCCGCTCGAGAAGCAG
CTCACCATCGGGGAGGCCCTGCCGACCGTGATGATGGTGGCCGGCGTCAACGGCGCGGGCAAGACGACGAGCATCGGCAA
GCTCACCCGCCATCTCGCCGACGGCGGCGAGAAGGTCCTGCTGGCCGCCGCCGACACCTTTCGTGCCGCGGCGCGCGAAC
AGCTGGCGGTGTGGGCCGGCCGCACCAACGTCGAAATCGTGAGCCAGGAAGGCGGCGATCCGTCGGCCGTCACATTCGAT
GCCGTGCTCGCCGGCAAGGCGCGCCGCTGCGATGTCGTCATCGCCGACACCGCCGGCCGCCTGCCGACGCAGCTTCACCT
GATGGAAGAGCTGAGGAAGATCAAGCGCACCATCGCCAAGGCGCAGGAGGGCGCGCCGCATGAAATCCTGCTCGTCGTCG
ATGGCAACACGGGCCAGAACGCGTTGACACAGGTGAAGGCTTTCGACGATGCGCTGCAGCTCACCGGACTCATCGTGACC
AAGCTCGACGGCACGGCCAAAGGAGGCATGCTTGCCGCGATTGCCCGCGAGCGGCCCGTGCCGGTCTACTTCATCGGCGT
TGGCGAAAAGCTCGAGGACCTGGAGACCTTCGACGCCCGCGAGTTTGCCAACGCATTGCTGGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(86-148)

SRP54-type protein, GTPase domain (SRP54)

(168-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.604

86.413

0.489