Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   P3S51_RS03100 Genome accession   NZ_CP121303
Coordinates   649002..650123 (-) Length   373 a.a.
NCBI ID   WP_154772395.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 644002..655123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS03070 (P3S51_03070) - 644807..645655 (+) 849 WP_311918272.1 class II glutamine amidotransferase -
  P3S51_RS03075 (P3S51_03075) - 645929..646384 (+) 456 WP_154772390.1 bacteriohemerythrin -
  P3S51_RS03080 (P3S51_03080) - 646540..647622 (+) 1083 WP_248103105.1 hypothetical protein -
  P3S51_RS03085 (P3S51_03085) - 647622..647948 (+) 327 WP_154772392.1 RnfH family protein -
  P3S51_RS03090 (P3S51_03090) - 647990..648388 (-) 399 WP_248103108.1 outer membrane protein assembly factor BamE -
  P3S51_RS03095 (P3S51_03095) fur 648500..648937 (+) 438 WP_154772394.1 ferric iron uptake transcriptional regulator -
  P3S51_RS03100 (P3S51_03100) pilU 649002..650123 (-) 1122 WP_154772395.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  P3S51_RS03105 (P3S51_03105) pilT 650157..651194 (-) 1038 WP_154772396.1 type IV pilus twitching motility protein PilT Machinery gene
  P3S51_RS03110 (P3S51_03110) - 651318..652004 (+) 687 WP_154772397.1 YggS family pyridoxal phosphate-dependent enzyme -
  P3S51_RS03115 (P3S51_03115) - 652115..652537 (+) 423 WP_311918273.1 hypothetical protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 41932.09 Da        Isoelectric Point: 6.1186

>NTDB_id=811741 P3S51_RS03100 WP_154772395.1 649002..650123(-) (pilU) [Acinetobacter sp. ANC 7201]
MDFNDLLNLMIQQKASDLFITADVEPSMKINGQIVPVVKTKLSGDVVGQLIQAIMTDKQKQEFSETRECNFAISNKDKTA
RFRVSAFQQRDQPGMVLRRIETRIPEIEELNLPPILKDLALKKRGIVIFVGATGTGKSTSLASVIGFRNQNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEVALKNTLRQAPDVIMIGEIRSRETMNYAIAFAETGHLVFATLHANNANQALDR
IIHFFEADRHSQLFMDLSLNLQAIIAQQLIPTVDGNSRRAAIEILINSPLISDLIRKGEINEIKELMKRSRELGMQTFDQ
ALFDLYQAKQISYKEALKHADSPNDLRLQIKLSEEGGLSRLSESTSRITFDTE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=811741 P3S51_RS03100 WP_154772395.1 649002..650123(-) (pilU) [Acinetobacter sp. ANC 7201]
ATGGACTTTAATGACTTATTGAACCTCATGATTCAGCAAAAAGCATCTGACCTATTTATTACGGCAGATGTTGAACCATC
AATGAAAATTAATGGTCAAATTGTGCCTGTCGTGAAAACAAAGTTATCAGGTGATGTTGTTGGTCAGCTTATACAAGCAA
TTATGACTGACAAACAGAAGCAAGAGTTTTCAGAAACACGTGAATGCAACTTTGCAATTTCAAATAAAGATAAAACTGCA
CGTTTTCGTGTAAGTGCATTTCAACAGCGTGATCAACCTGGGATGGTATTACGTCGTATTGAAACACGTATTCCTGAAAT
TGAAGAGTTAAATCTTCCACCTATTTTAAAAGACCTAGCCTTAAAAAAACGAGGTATTGTAATTTTTGTAGGTGCAACTG
GTACGGGTAAATCTACTTCACTAGCATCTGTTATTGGCTTTCGTAATCAAAATTCTAAAGGTCATATCATTACCATTGAA
GACCCTATTGAATTTATTCACGAACATGCAGGCTGTATTATTACGCAACGTGAAGTTGGTATAGATACAGATTCATTTGA
AGTTGCATTAAAAAATACGCTTCGTCAGGCGCCAGATGTCATTATGATTGGTGAGATTCGCTCTCGTGAAACCATGAATT
ATGCTATTGCCTTTGCCGAAACAGGTCATTTAGTTTTTGCAACTTTGCATGCAAACAATGCCAACCAAGCACTCGATCGT
ATCATCCACTTCTTTGAAGCTGACCGCCACAGTCAATTGTTTATGGATTTATCTTTAAATTTACAAGCAATTATTGCGCA
ACAACTTATTCCAACAGTTGATGGCAATTCTAGACGTGCAGCAATTGAGATTTTAATTAATTCACCGCTTATTTCTGACT
TAATTCGTAAAGGTGAAATAAATGAAATTAAAGAACTCATGAAACGTTCACGTGAATTAGGGATGCAAACTTTTGACCAA
GCTTTATTTGATTTGTACCAAGCAAAGCAAATTAGCTATAAAGAAGCGTTAAAGCATGCAGATTCACCAAACGATTTGCG
TCTACAAATTAAGCTCTCTGAAGAGGGTGGCTTAAGCCGATTATCAGAATCAACAAGTCGCATCACCTTTGATACTGAAT
AA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

76.596

100

0.772
  pilU Pseudomonas stutzeri DSM 10701

66.307

99.464

0.66
  pilU Vibrio cholerae strain A1552

56.41

94.102

0.531
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.486

92.761

0.394
  pilT Legionella pneumophila strain ERS1305867

41.716

90.617

0.378
  pilT Legionella pneumophila strain Lp02

41.716

90.617

0.378
  pilT Acinetobacter baylyi ADP1

39.942

91.957

0.367
  pilT Acinetobacter nosocomialis M2

39.65

91.957

0.365
  pilT Acinetobacter baumannii D1279779

39.65

91.957

0.365
  pilT Acinetobacter baumannii strain A118

39.65

91.957

0.365
  pilT Pseudomonas aeruginosa PAK

39.306

92.761

0.365