Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   P7F70_RS00795 Genome accession   NZ_CP121201
Coordinates   139805..140758 (+) Length   317 a.a.
NCBI ID   WP_278024841.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134805..145758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS00785 (P7F70_00785) - 137608..138864 (-) 1257 WP_278024840.1 ISL3 family transposase -
  P7F70_RS00790 (P7F70_00790) - 139362..139742 (+) 381 WP_218653889.1 DUF1033 family protein -
  P7F70_RS00795 (P7F70_00795) comYA 139805..140758 (+) 954 WP_278024841.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F70_RS00800 (P7F70_00800) comYB 140691..141710 (+) 1020 WP_278025310.1 competence type IV pilus assembly protein ComGB Machinery gene
  P7F70_RS00805 (P7F70_00805) comYC 141711..142004 (+) 294 WP_278024842.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F70_RS00810 (P7F70_00810) comGD 141985..142401 (+) 417 WP_278024843.1 competence type IV pilus minor pilin ComGD -
  P7F70_RS00815 (P7F70_00815) comGE 142373..142672 (+) 300 WP_278024844.1 competence type IV pilus minor pilin ComGE -
  P7F70_RS00820 (P7F70_00820) comYF 142650..143087 (+) 438 WP_278024845.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F70_RS00825 (P7F70_00825) comGG 143065..143466 (+) 402 WP_278024846.1 competence type IV pilus minor pilin ComGG -
  P7F70_RS00830 (P7F70_00830) comYH 143509..144462 (+) 954 WP_278024847.1 class I SAM-dependent methyltransferase Machinery gene
  P7F70_RS00835 (P7F70_00835) - 144523..145713 (+) 1191 WP_278024848.1 acetate kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35773.69 Da        Isoelectric Point: 5.2554

>NTDB_id=810969 P7F70_RS00795 WP_278024841.1 139805..140758(+) (comYA) [Streptococcus pluranimalium strain SP28]
MVQDLAKELIVQAVEYEAQDVYIIPRKDDYDVFMRINDERRFIETHGFDRMASLISHFKFVAGMTVGEKRRSQLGSCDYD
IGSAKLVSLRLSTVGDYRGHESLVIRLLHDGRQDLRYWFNGIRNIMAEFSSRGLYLFSGPTGSGKTTLMYQLLKETCKDK
QIISIEDPVEIKDDSILQLQLNEDIGMTYDSLIKLSLRHRPDVLVIGEIRDTQTAQAAIRASLTGATVFATIHAKSIPGV
YYRMIELGVSKDDLTNSLAGVCYQRLIGGGGLIDVAKDKFQDHSPSQWNQYLVELFEAGYITEEQVKTESISYSEAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=810969 P7F70_RS00795 WP_278024841.1 139805..140758(+) (comYA) [Streptococcus pluranimalium strain SP28]
ATGGTTCAAGATTTAGCAAAGGAACTGATTGTTCAGGCAGTCGAATATGAAGCTCAAGATGTTTATATCATTCCTCGAAA
GGATGATTACGATGTTTTTATGCGTATTAATGACGAGAGGAGATTTATTGAAACTCATGGCTTTGATCGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGAATGACTGTCGGGGAAAAGCGCCGAAGTCAACTAGGATCTTGTGATTATGAT
ATTGGTAGTGCTAAGCTAGTTTCTTTACGCCTCTCAACTGTTGGAGATTACCGAGGGCATGAGAGTTTGGTGATTCGTCT
GCTGCATGATGGGCGTCAGGACTTACGCTATTGGTTCAATGGTATACGTAATATCATGGCAGAATTTAGTTCCAGAGGTC
TATATCTTTTTTCGGGACCGACTGGGAGTGGCAAAACGACTCTCATGTATCAATTGTTAAAGGAAACATGTAAAGATAAA
CAGATTATTTCTATTGAAGATCCGGTTGAAATTAAGGATGATAGCATTTTACAATTACAGCTTAATGAAGATATTGGTAT
GACTTACGATAGTCTGATTAAGTTGTCGTTGAGACATCGTCCAGATGTATTGGTTATTGGTGAAATTCGGGATACGCAAA
CAGCGCAAGCGGCTATTCGAGCTAGTTTGACTGGTGCTACAGTCTTTGCAACCATTCATGCTAAGAGTATTCCAGGGGTT
TATTACCGCATGATAGAATTGGGTGTTTCTAAAGATGATCTAACAAATAGTCTGGCGGGAGTTTGTTATCAACGTTTGAT
AGGAGGAGGTGGATTGATAGATGTGGCAAAAGATAAGTTCCAGGATCACTCACCAAGCCAGTGGAACCAATACTTGGTTG
AGCTTTTTGAAGCAGGATATATCACTGAGGAGCAGGTTAAAACCGAGAGTATTAGCTATTCAGAAGCAGGTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

65.595

98.107

0.644
  comYA Streptococcus mutans UA159

65.595

98.107

0.644
  comYA Streptococcus gordonii str. Challis substr. CH1

62.658

99.685

0.625
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.102

99.054

0.615
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.783

99.054

0.612
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.783

99.054

0.612
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.935

97.792

0.606
  comGA Lactococcus lactis subsp. cremoris KW2

50.789

100

0.508