Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   P7F70_RS00800 Genome accession   NZ_CP121201
Coordinates   140691..141710 (+) Length   339 a.a.
NCBI ID   WP_278025310.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135691..146710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS00785 (P7F70_00785) - 137608..138864 (-) 1257 WP_278024840.1 ISL3 family transposase -
  P7F70_RS00790 (P7F70_00790) - 139362..139742 (+) 381 WP_218653889.1 DUF1033 family protein -
  P7F70_RS00795 (P7F70_00795) comYA 139805..140758 (+) 954 WP_278024841.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F70_RS00800 (P7F70_00800) comYB 140691..141710 (+) 1020 WP_278025310.1 competence type IV pilus assembly protein ComGB Machinery gene
  P7F70_RS00805 (P7F70_00805) comYC 141711..142004 (+) 294 WP_278024842.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F70_RS00810 (P7F70_00810) comGD 141985..142401 (+) 417 WP_278024843.1 competence type IV pilus minor pilin ComGD -
  P7F70_RS00815 (P7F70_00815) comGE 142373..142672 (+) 300 WP_278024844.1 competence type IV pilus minor pilin ComGE -
  P7F70_RS00820 (P7F70_00820) comYF 142650..143087 (+) 438 WP_278024845.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F70_RS00825 (P7F70_00825) comGG 143065..143466 (+) 402 WP_278024846.1 competence type IV pilus minor pilin ComGG -
  P7F70_RS00830 (P7F70_00830) comYH 143509..144462 (+) 954 WP_278024847.1 class I SAM-dependent methyltransferase Machinery gene
  P7F70_RS00835 (P7F70_00835) - 144523..145713 (+) 1191 WP_278024848.1 acetate kinase -
  P7F70_RS00840 (P7F70_00840) - 146077..146274 (+) 198 WP_278024849.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38471.90 Da        Isoelectric Point: 9.7914

>NTDB_id=810970 P7F70_RS00800 WP_278025310.1 140691..141710(+) (comYB) [Streptococcus pluranimalium strain SP28]
MKQDISLRSRLKPRVLAIQKQVKIIKLFNTLLSSGFNLPETVDFLKRSQLIPDKQVQIMYETLLAGFGLPVLMKNLGFSD
TVVTQLSLAETHGNSQKSLTKIEAYLRQVSLVKKKLIEVGTYPIVLLAFLVLIMLGLKNYLLPQLTEGNAATAILEHFPQ
FFLGGLILSAVFTLLAVRMAPKVEALRLYRFLSSLPFLGSLIKVYLTAYYAREWGNLLGQGVEMTRVVSLMQEQESRLFV
SIGRDMQAALLAGQSFHAKVLEYPFFLKELSLIIEYGNAKGHLGQELEVFSEELWEQFFYRVNRAMQLVQPLIFVMVALM
IVMIYAAMLLPMYQSMEVM

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=810970 P7F70_RS00800 WP_278025310.1 140691..141710(+) (comYB) [Streptococcus pluranimalium strain SP28]
TTGAAGCAGGATATATCACTGAGGAGCAGGTTAAAACCGAGAGTATTAGCTATTCAGAAGCAGGTTAAAATCATAAAACT
CTTTAATACTCTTTTGTCCTCGGGCTTTAATCTACCTGAAACGGTTGATTTCCTGAAGCGTAGTCAACTGATACCAGATA
AACAGGTTCAAATCATGTATGAAACCTTGTTAGCTGGTTTTGGGTTACCGGTTTTGATGAAAAATTTGGGTTTTTCAGAT
ACGGTTGTTACGCAGTTATCTTTGGCTGAGACCCATGGCAATAGTCAGAAGAGTTTGACTAAAATTGAAGCTTATTTAAG
GCAGGTTAGCCTTGTTAAGAAAAAGTTGATTGAAGTGGGGACTTATCCCATTGTTTTATTAGCCTTTTTGGTGTTAATCA
TGCTGGGTTTGAAAAACTACCTCTTGCCCCAGTTAACTGAAGGCAATGCAGCGACAGCTATTCTGGAACATTTTCCTCAG
TTCTTTTTAGGTGGTCTGATTTTGAGTGCAGTCTTTACACTTCTGGCTGTTAGGATGGCACCAAAGGTGGAAGCACTGAG
GCTTTATCGGTTTTTGAGTAGTCTTCCTTTTTTGGGCAGTCTTATCAAAGTTTATTTGACGGCTTATTATGCACGTGAAT
GGGGAAATCTTTTGGGGCAGGGGGTTGAGATGACAAGGGTTGTGTCGCTCATGCAGGAACAGGAATCGCGACTGTTTGTA
AGTATTGGTCGAGATATGCAGGCGGCACTTTTAGCTGGTCAATCCTTTCATGCTAAGGTTTTAGAGTATCCATTCTTCTT
GAAAGAGTTAAGTCTGATTATTGAGTATGGTAATGCCAAAGGGCATCTTGGTCAAGAGTTAGAAGTTTTCTCTGAAGAGC
TTTGGGAACAGTTTTTTTATCGTGTGAATAGGGCTATGCAGTTAGTTCAGCCCCTTATTTTTGTCATGGTTGCCTTGATG
ATTGTTATGATCTACGCAGCTATGCTTCTACCAATGTATCAATCTATGGAGGTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

59.357

100

0.599
  comYB Streptococcus mutans UA159

59.357

100

0.599
  comGB/cglB Streptococcus mitis NCTC 12261

55.821

98.82

0.552
  comYB Streptococcus gordonii str. Challis substr. CH1

55.03

99.705

0.549
  comGB/cglB Streptococcus mitis SK321

54.925

98.82

0.543
  comGB/cglB Streptococcus pneumoniae Rx1

54.03

98.82

0.534
  comGB/cglB Streptococcus pneumoniae D39

54.03

98.82

0.534
  comGB/cglB Streptococcus pneumoniae R6

54.03

98.82

0.534
  comGB/cglB Streptococcus pneumoniae TIGR4

54.03

98.82

0.534
  comGB Lactococcus lactis subsp. cremoris KW2

48.071

99.41

0.478