Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   P7F70_RS00830 Genome accession   NZ_CP121201
Coordinates   143509..144462 (+) Length   317 a.a.
NCBI ID   WP_278024847.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138509..149462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS00790 (P7F70_00790) - 139362..139742 (+) 381 WP_218653889.1 DUF1033 family protein -
  P7F70_RS00795 (P7F70_00795) comYA 139805..140758 (+) 954 WP_278024841.1 competence type IV pilus ATPase ComGA Machinery gene
  P7F70_RS00800 (P7F70_00800) comYB 140691..141710 (+) 1020 WP_278025310.1 competence type IV pilus assembly protein ComGB Machinery gene
  P7F70_RS00805 (P7F70_00805) comYC 141711..142004 (+) 294 WP_278024842.1 competence type IV pilus major pilin ComGC Machinery gene
  P7F70_RS00810 (P7F70_00810) comGD 141985..142401 (+) 417 WP_278024843.1 competence type IV pilus minor pilin ComGD -
  P7F70_RS00815 (P7F70_00815) comGE 142373..142672 (+) 300 WP_278024844.1 competence type IV pilus minor pilin ComGE -
  P7F70_RS00820 (P7F70_00820) comYF 142650..143087 (+) 438 WP_278024845.1 competence type IV pilus minor pilin ComGF Machinery gene
  P7F70_RS00825 (P7F70_00825) comGG 143065..143466 (+) 402 WP_278024846.1 competence type IV pilus minor pilin ComGG -
  P7F70_RS00830 (P7F70_00830) comYH 143509..144462 (+) 954 WP_278024847.1 class I SAM-dependent methyltransferase Machinery gene
  P7F70_RS00835 (P7F70_00835) - 144523..145713 (+) 1191 WP_278024848.1 acetate kinase -
  P7F70_RS00840 (P7F70_00840) - 146077..146274 (+) 198 WP_278024849.1 helix-turn-helix transcriptional regulator -
  P7F70_RS00845 (P7F70_00845) - 146287..146739 (+) 453 WP_115129545.1 hypothetical protein -
  P7F70_RS00850 (P7F70_00850) - 146773..147444 (+) 672 WP_218653900.1 type II CAAX endopeptidase family protein -
  P7F70_RS00855 (P7F70_00855) proC 147489..148259 (-) 771 WP_278024850.1 pyrroline-5-carboxylate reductase -
  P7F70_RS00860 (P7F70_00860) pepA 148299..149363 (-) 1065 WP_278024851.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35703.58 Da        Isoelectric Point: 4.3566

>NTDB_id=810973 P7F70_RS00830 WP_278024847.1 143509..144462(+) (comYH) [Streptococcus pluranimalium strain SP28]
MNFEKIESAYQLILENTQLIENDIKTNIYDALIEQNAFYLGAENAPIKVAENNQALKDLQLSKEEWRRAYQFVFIKASQT
EKLQANHQFTPDAIGFLVLYLLENLTSQEHLDVIEIGSGTGNLAQTLLNNSNRDLDYLGLELDDLLIDLSASIAEVMGAN
VSFVQEDAVRPQILKESDVIISDLPVGYYPNDAIAKRYQVAATDEHTYAHHLLMEQSLKYLKKDGLAILLAPTNLLTSGQ
SDLLKKWLAGYADILAVITLPETLFGNPANAKSLFVLQKQAKTKPETFVYHLSDIQNPEILQDFMENLKIWKDDNAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=810973 P7F70_RS00830 WP_278024847.1 143509..144462(+) (comYH) [Streptococcus pluranimalium strain SP28]
ATGAATTTTGAAAAAATCGAATCAGCCTATCAGTTGATTTTAGAAAATACCCAGCTTATTGAAAATGACATTAAGACCAA
TATTTACGATGCTTTGATTGAGCAAAATGCCTTTTATTTGGGTGCTGAAAATGCTCCTATAAAAGTGGCTGAAAATAATC
AAGCCTTGAAAGATTTGCAACTGAGTAAAGAAGAATGGCGTCGTGCCTATCAGTTCGTTTTTATCAAGGCTAGTCAGACG
GAGAAACTTCAAGCCAATCATCAGTTTACACCAGATGCGATTGGCTTCTTGGTACTTTATCTTTTGGAAAATTTGACCAG
TCAAGAGCATTTGGATGTGATTGAAATCGGTAGTGGTACTGGTAATTTGGCGCAAACCCTTCTAAATAATAGTAATCGTG
ATTTAGACTATCTCGGTTTGGAGTTGGATGATTTATTGATTGATTTATCAGCATCTATCGCAGAAGTGATGGGAGCAAAT
GTTAGCTTCGTTCAAGAAGATGCAGTGCGTCCACAGATTTTGAAAGAGAGTGACGTCATCATCAGTGATCTACCAGTTGG
TTATTATCCGAATGACGCTATCGCTAAACGTTATCAAGTAGCTGCTACTGATGAGCATACTTATGCGCACCATCTCTTGA
TGGAGCAATCCTTGAAGTATTTGAAAAAAGATGGTCTAGCGATTCTTTTGGCACCGACTAATCTCTTAACTAGTGGGCAA
AGTGATCTCTTGAAAAAATGGTTGGCAGGTTATGCAGATATCTTGGCAGTGATTACCTTACCAGAAACTTTATTTGGTAA
TCCGGCTAATGCTAAATCTCTGTTTGTCTTGCAAAAGCAGGCTAAAACTAAGCCAGAGACTTTTGTTTATCATTTGTCAG
ATATTCAAAATCCGGAAATTTTACAGGATTTTATGGAAAATTTGAAAATCTGGAAAGATGATAATGCCATTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

67.089

99.685

0.669
  comYH Streptococcus mutans UA159

66.772

99.685

0.666