Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   P3G65_RS01010 Genome accession   NZ_CP120417
Coordinates   187687..187992 (+) Length   101 a.a.
NCBI ID   WP_029345656.1    Uniprot ID   -
Organism   Lactococcus sp. bn62     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182687..192992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G65_RS00990 (P3G65_00995) guaB 183797..185278 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  P3G65_RS00995 (P3G65_01000) rpsU 185404..185580 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  P3G65_RS01000 (P3G65_01005) comGA 185766..186710 (+) 945 WP_019291447.1 competence type IV pilus ATPase ComGA Machinery gene
  P3G65_RS01005 (P3G65_01010) comGB 186649..187668 (+) 1020 Protein_187 competence type IV pilus assembly protein ComGB -
  P3G65_RS01010 (P3G65_01015) comYC 187687..187992 (+) 306 WP_029345656.1 competence type IV pilus major pilin ComGC Machinery gene
  P3G65_RS01015 (P3G65_01020) comGD 187967..188383 (+) 417 WP_019291446.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3G65_RS01020 (P3G65_01025) comGE 188349..188648 (+) 300 WP_019291445.1 competence type IV pilus minor pilin ComGE -
  P3G65_RS01025 (P3G65_01030) comGF 188629..189069 (+) 441 WP_019291444.1 competence type IV pilus minor pilin ComGF -
  P3G65_RS01030 (P3G65_01035) - 189301..190146 (+) 846 WP_284071234.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  P3G65_RS01035 (P3G65_01040) - 190217..191101 (-) 885 WP_019291442.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11363.31 Da        Isoelectric Point: 10.2213

>NTDB_id=805537 P3G65_RS01010 WP_029345656.1 187687..187992(+) (comYC) [Lactococcus sp. bn62]
MKKKRLKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVSN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=805537 P3G65_RS01010 WP_029345656.1 187687..187992(+) (comYC) [Lactococcus sp. bn62]
ATGAAAAAAAAGAGACTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTATCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

62.376

100

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae R6

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

58.416

100

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396