Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P3G65_RS01015 Genome accession   NZ_CP120417
Coordinates   187967..188383 (+) Length   138 a.a.
NCBI ID   WP_019291446.1    Uniprot ID   -
Organism   Lactococcus sp. bn62     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182967..193383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G65_RS00990 (P3G65_00995) guaB 183797..185278 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  P3G65_RS00995 (P3G65_01000) rpsU 185404..185580 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  P3G65_RS01000 (P3G65_01005) comGA 185766..186710 (+) 945 WP_019291447.1 competence type IV pilus ATPase ComGA Machinery gene
  P3G65_RS01005 (P3G65_01010) comGB 186649..187668 (+) 1020 Protein_187 competence type IV pilus assembly protein ComGB -
  P3G65_RS01010 (P3G65_01015) comYC 187687..187992 (+) 306 WP_029345656.1 competence type IV pilus major pilin ComGC Machinery gene
  P3G65_RS01015 (P3G65_01020) comGD 187967..188383 (+) 417 WP_019291446.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3G65_RS01020 (P3G65_01025) comGE 188349..188648 (+) 300 WP_019291445.1 competence type IV pilus minor pilin ComGE -
  P3G65_RS01025 (P3G65_01030) comGF 188629..189069 (+) 441 WP_019291444.1 competence type IV pilus minor pilin ComGF -
  P3G65_RS01030 (P3G65_01035) - 189301..190146 (+) 846 WP_284071234.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  P3G65_RS01035 (P3G65_01040) - 190217..191101 (-) 885 WP_019291442.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15743.32 Da        Isoelectric Point: 9.9391

>NTDB_id=805538 P3G65_RS01015 WP_019291446.1 187967..188383(+) (comGD) [Lactococcus sp. bn62]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSAKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKNISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=805538 P3G65_RS01015 WP_019291446.1 187967..188383(+) (comGD) [Lactococcus sp. bn62]
ATGCAAAACGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGCCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGTACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAAACATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362