Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RJW53_RS02495 | Genome accession | NZ_CP134488 |
| Coordinates | 470628..471026 (+) | Length | 132 a.a. |
| NCBI ID | WP_074389460.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain NLS50 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 465628..476026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJW53_RS02445 (RJW53_02445) | - | 465810..466040 (+) | 231 | WP_074389453.1 | hypothetical protein | - |
| RJW53_RS02450 (RJW53_02450) | - | 466033..466257 (+) | 225 | WP_044667234.1 | hypothetical protein | - |
| RJW53_RS02455 (RJW53_02455) | - | 466261..466857 (+) | 597 | WP_074389454.1 | HNH endonuclease signature motif containing protein | - |
| RJW53_RS02460 (RJW53_02460) | - | 466841..467320 (+) | 480 | WP_074389455.1 | siphovirus Gp157 family protein | - |
| RJW53_RS02465 (RJW53_02465) | - | 467317..467679 (+) | 363 | WP_226319115.1 | hypothetical protein | - |
| RJW53_RS02470 (RJW53_02470) | - | 467679..468143 (+) | 465 | WP_044768165.1 | hypothetical protein | - |
| RJW53_RS02475 (RJW53_02475) | - | 468112..469284 (+) | 1173 | WP_074389456.1 | DEAD/DEAH box helicase family protein | - |
| RJW53_RS02480 (RJW53_02480) | - | 469361..469627 (+) | 267 | WP_311047962.1 | hypothetical protein | - |
| RJW53_RS02485 (RJW53_02485) | - | 469637..470335 (+) | 699 | WP_074389458.1 | ERF family protein | - |
| RJW53_RS02490 (RJW53_02490) | - | 470335..470631 (+) | 297 | WP_074389459.1 | hypothetical protein | - |
| RJW53_RS02495 (RJW53_02495) | ssbA | 470628..471026 (+) | 399 | WP_074389460.1 | single-stranded DNA-binding protein | Machinery gene |
| RJW53_RS02500 (RJW53_02500) | - | 471037..471864 (+) | 828 | WP_074389461.1 | bifunctional DNA primase/polymerase | - |
| RJW53_RS02505 (RJW53_02505) | - | 471848..473236 (+) | 1389 | WP_079844859.1 | virulence-associated E family protein | - |
| RJW53_RS02510 (RJW53_02510) | - | 473609..473764 (+) | 156 | WP_162841092.1 | hypothetical protein | - |
| RJW53_RS02515 (RJW53_02515) | - | 473761..474069 (+) | 309 | WP_044770771.1 | DUF1372 family protein | - |
| RJW53_RS02520 (RJW53_02520) | - | 474394..474828 (+) | 435 | WP_002937915.1 | DUF1492 domain-containing protein | - |
| RJW53_RS02525 (RJW53_02525) | - | 474925..475272 (+) | 348 | WP_044770769.1 | HNH endonuclease | - |
| RJW53_RS02530 (RJW53_02530) | - | 475361..475723 (+) | 363 | WP_226319117.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14904.51 Da Isoelectric Point: 4.6582
>NTDB_id=804085 RJW53_RS02495 WP_074389460.1 470628..471026(+) (ssbA) [Streptococcus suis strain NLS50]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINCVIWRQQAENLANWVKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINCVIWRQQAENLANWVKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
Nucleotide
Download Length: 399 bp
>NTDB_id=804085 RJW53_RS02495 WP_074389460.1 470628..471026(+) (ssbA) [Streptococcus suis strain NLS50]
ATGATTAACAACGTAGTATTGGTAGGACGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACTTTGGCTGTCAATCGCAACTTCAAAAACCAAGATGGTGAGCGCGAAGCAGATTTCATCAACTGTGTCATTT
GGCGTCAGCAAGCTGAGAATTTGGCGAATTGGGTTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGACAACGCGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTGG
ACAACAGTCGAATTCTCAAGATGGCTCATTTGGAAATTCAAGTCCAATGGATATCCAAGACGAAGATTTGCCGTTCTAG
ATGATTAACAACGTAGTATTGGTAGGACGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACTTTGGCTGTCAATCGCAACTTCAAAAACCAAGATGGTGAGCGCGAAGCAGATTTCATCAACTGTGTCATTT
GGCGTCAGCAAGCTGAGAATTTGGCGAATTGGGTTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGACAACGCGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTGG
ACAACAGTCGAATTCTCAAGATGGCTCATTTGGAAATTCAAGTCCAATGGATATCCAAGACGAAGATTTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.697 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.682 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.727 |
100 |
0.477 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.455 |
100 |
0.455 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.046 |
82.576 |
0.455 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.697 |
100 |
0.447 |
| ssbA | Streptococcus mutans UA159 |
43.939 |
100 |
0.439 |
| ssb | Vibrio cholerae strain A1552 |
28.902 |
100 |
0.379 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
47.17 |
80.303 |
0.379 |