Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P3U30_RS07790 Genome accession   NZ_CP120143
Coordinates   1598410..1598856 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog032     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593410..1603856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U30_RS07760 (P3U30_07760) gcvPA 1594336..1595682 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P3U30_RS07765 (P3U30_07765) gcvT 1595702..1596793 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U30_RS07770 (P3U30_07770) - 1596952..1597476 (-) 525 WP_001015120.1 shikimate kinase -
  P3U30_RS07775 (P3U30_07775) - 1597466..1597612 (-) 147 WP_001789879.1 hypothetical protein -
  P3U30_RS07780 (P3U30_07780) comGF 1597709..1598206 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3U30_RS07785 (P3U30_07785) comGE 1598124..1598423 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P3U30_RS07790 (P3U30_07790) comGD 1598410..1598856 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3U30_RS07795 (P3U30_07795) comGC 1598834..1599145 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U30_RS07800 (P3U30_07800) comGB 1599159..1600229 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3U30_RS07805 (P3U30_07805) comGA 1600201..1601175 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P3U30_RS07810 (P3U30_07810) - 1601227..1601850 (-) 624 WP_320409472.1 MBL fold metallo-hydrolase -
  P3U30_RS07815 (P3U30_07815) - 1601847..1602176 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  P3U30_RS07820 (P3U30_07820) - 1602176..1603162 (-) 987 WP_000161315.1 ROK family glucokinase -
  P3U30_RS07825 (P3U30_07825) - 1603159..1603362 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=803676 P3U30_RS07790 WP_001788899.1 1598410..1598856(-) (comGD) [Staphylococcus aureus strain Dog032]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=803676 P3U30_RS07790 WP_001788899.1 1598410..1598856(-) (comGD) [Staphylococcus aureus strain Dog032]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1