Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RJW56_RS00805 Genome accession   NZ_CP134472
Coordinates   127679..128086 (+) Length   135 a.a.
NCBI ID   WP_024394702.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122679..133086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS00780 (RJW56_00780) - 124080..124445 (+) 366 WP_002936568.1 DUF1033 family protein -
  RJW56_RS00785 (RJW56_00785) - 124480..125430 (-) 951 WP_024394700.1 S66 peptidase family protein -
  RJW56_RS00790 (RJW56_00790) comGA 125516..126466 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW56_RS00795 (RJW56_00795) comGB 126378..127415 (+) 1038 WP_043032925.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW56_RS00800 (RJW56_00800) comGC 127417..127698 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW56_RS00805 (RJW56_00805) comGD 127679..128086 (+) 408 WP_024394702.1 competence type IV pilus minor pilin ComGD Machinery gene
  RJW56_RS00810 (RJW56_00810) comGE 128058..128351 (+) 294 WP_024394703.1 competence type IV pilus minor pilin ComGE Machinery gene
  RJW56_RS00815 (RJW56_00815) comGF/cglF 128338..128772 (+) 435 WP_029750050.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW56_RS00820 (RJW56_00820) comGG 128750..129160 (+) 411 WP_024394705.1 competence type IV pilus minor pilin ComGG -
  RJW56_RS00825 (RJW56_00825) comGH 129217..130170 (+) 954 WP_024394706.1 class I SAM-dependent methyltransferase Machinery gene
  RJW56_RS00830 (RJW56_00830) - 130220..131407 (+) 1188 WP_014637319.1 acetate kinase -
  RJW56_RS00835 (RJW56_00835) - 131722..132273 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15333.50 Da        Isoelectric Point: 9.7552

>NTDB_id=803677 RJW56_RS00805 WP_024394702.1 127679..128086(+) (comGD) [Streptococcus suis strain 1522228]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQSVSLTIGEQEVANGRQ
AVQVPRNVEVLEGKTITFEEDGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=803677 RJW56_RS00805 WP_024394702.1 127679..128086(+) (comGD) [Streptococcus suis strain 1522228]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CCTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCTGCTAGTTCTCACCAGTCAGTTAGCTTGACTATCGGCGAACAAGAAGTGGCAAATGGTCGTCAG
GCAGTTCAGGTACCCAGAAATGTAGAAGTATTAGAGGGGAAGACCATCACATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATACGCTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

46.457

94.074

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363